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3CPF
Asym. Unit
Info
Asym.Unit (47 KB)
Biol.Unit 1 (22 KB)
Biol.Unit 2 (19 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR EIF5A
Authors
:
L. Nedyalkova, Y. Tong, W. Tempel, B. Hong, F. Mackenzie, C. H. Arrowsmi A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park, Structur Genomics Consortium (Sgc)
Date
:
31 Mar 08 (Deposition) - 15 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structural Genomics Consortium, Leukemia, Apoptosis, Sgc, Hypusine, Initiation Factor, Nucleus, Protein Biosynthesis, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tong, I. Park, B. S. Hong, L. Nedyalkova, W. Tempel, H. W. Park
Crystal Structure Of Human Eif5A1: Insight Into Functional Similarity Of Human Eif5A1 And Eif5A2.
Proteins V. 75 1040 2009
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: UNKNOWN ATOM OR ION (UNXa)
1b: UNKNOWN ATOM OR ION (UNXb)
1c: UNKNOWN ATOM OR ION (UNXc)
1d: UNKNOWN ATOM OR ION (UNXd)
1e: UNKNOWN ATOM OR ION (UNXe)
1f: UNKNOWN ATOM OR ION (UNXf)
View:
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No.
Name
Count
Type
Full Name
1
UNX
6
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:99 , LEU A:101 , ARG A:109 , GLU A:110 , ASP A:111 , LEU A:112
BINDING SITE FOR RESIDUE UNX A 1
2
AC2
SOFTWARE
ASP A:118 , GLU A:122
BINDING SITE FOR RESIDUE UNX A 3
3
AC3
SOFTWARE
SER A:139 , GLU A:144
BINDING SITE FOR RESIDUE UNX A 5
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IF5A_HYPUSINE (A:48-55)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IF5A_HYPUSINE
PS00302
Eukaryotic initiation factor 5A hypusine signature.
IF5A1_HUMAN
48-55
1
A:48-55
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Exons
(4, 8)
Info
All Exons
Exon 1.5b (A:15-55 (gaps) | B:15-44)
Exon 1.6 (A:56-90 | B:56-90)
Exon 1.7 (A:91-134 | B:91-134)
Exon 1.8 (A:135-150 | B:135-151)
View:
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All Exon Boundaries
1: Boundary 1.2/1.5b
2: Boundary 1.5b/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000336458
2
ENSE00001274883
chr17:
7210692-7211071
380
IF5A1_HUMAN
-
0
0
-
-
1.5b
ENST00000336458
5b
ENSE00001605087
chr17:
7212934-7213119
186
IF5A1_HUMAN
1-55
55
2
A:15-55 (gaps)
B:15-44
41
30
1.6
ENST00000336458
6
ENSE00001791569
chr17:
7214337-7214441
105
IF5A1_HUMAN
56-90
35
2
A:56-90
B:56-90
35
35
1.7
ENST00000336458
7
ENSE00001755330
chr17:
7214669-7214800
132
IF5A1_HUMAN
91-134
44
2
A:91-134
B:91-134
44
44
1.8
ENST00000336458
8
ENSE00001615830
chr17:
7214897-7214970
74
IF5A1_HUMAN
135-154
20
2
A:135-150
B:135-151
16
17
1.9b
ENST00000336458
9b
ENSE00001525671
chr17:
7215141-7215782
642
IF5A1_HUMAN
-
0
0
-
-
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3cpfa2 (A:84-150)
1b: SCOP_d3cpfb2 (B:84-151)
2a: SCOP_d3cpfa1 (A:15-83)
2b: SCOP_d3cpfb1 (B:15-83)
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Class
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All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
automated matches
(46)
Protein domain
:
automated matches
(46)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3cpfa2
A:84-150
1b
d3cpfb2
B:84-151
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Translation proteins SH3-like domain
(251)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d3cpfa1
A:15-83
2b
d3cpfb1
B:15-83
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3cpfB02 (B:84-151)
1b: CATH_3cpfA02 (A:84-150)
2a: CATH_3cpfA01 (A:15-83)
2b: CATH_3cpfB01 (B:15-83)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
3cpfB02
B:84-151
1b
3cpfA02
A:84-150
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.30, no name defined]
(111)
Human (Homo sapiens)
(10)
2a
3cpfA01
A:15-83
2b
3cpfB01
B:15-83
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Pfam Domains
(0, 0)
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Asym.Unit (47 KB)
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