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3COV
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE SYNTHETASE AT 1.5 ANG RESOLUTION- APO FORM
Authors
:
A. Ciulli, D. Y. Chirgadze, T. L. Blundell, C. Abell
Date
:
29 Mar 08 (Deposition) - 07 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Mycobacterium Tuberculosis, Pantothenate Biosynthesis, Enzymes, Ligase, Drug Design, Atp-Binding, Magnesium, Metal-Binding, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ciulli, D. E. Scott, M. Ando, F. Reyes, S. A. Saldanha, K. L. Tuck, D. Y. Chirgadze, T. L. Blundell, C. Abell
Inhibition Of Mycobacterium Tuberculosis Pantothenate Synthetase By Analogues Of The Reaction Intermediate.
Chembiochem V. 9 2606 2008
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: ETHANOL (EOHa)
1b: ETHANOL (EOHb)
1c: ETHANOL (EOHc)
1d: ETHANOL (EOHd)
1e: ETHANOL (EOHe)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EOH
5
Ligand/Ion
ETHANOL
2
GOL
4
Ligand/Ion
GLYCEROL
3
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:44 , HIS A:47 , LYS A:160 , SER A:196 , SER A:197
BINDING SITE FOR RESIDUE SO4 A 701
02
AC2
SOFTWARE
HIS B:44 , LYS B:160 , SER B:196 , SER B:197
BINDING SITE FOR RESIDUE SO4 B 702
03
AC3
SOFTWARE
PRO B:58 , ARG B:154
BINDING SITE FOR RESIDUE SO4 B 703
04
AC4
SOFTWARE
ARG A:56 , PRO A:58 , ARG A:154
BINDING SITE FOR RESIDUE SO4 A 704
05
AC5
SOFTWARE
GLN A:72 , GLN A:164
BINDING SITE FOR RESIDUE GOL A 705
06
AC6
SOFTWARE
PRO B:38 , GLN B:72 , GLN B:164
BINDING SITE FOR RESIDUE GOL B 706
07
AC7
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 707
08
AC8
SOFTWARE
PRO A:111 , ASP A:112
BINDING SITE FOR RESIDUE GOL A 708
09
AC9
SOFTWARE
LEU A:114 , ARG A:115 , THR A:117 , GLN B:119 , PRO B:120
BINDING SITE FOR RESIDUE EOH A 709
10
BC1
SOFTWARE
SER B:24 , ARG B:25 , ARG B:151
BINDING SITE FOR RESIDUE EOH B 710
11
BC2
SOFTWARE
THR A:218 , HIS B:222 , THR B:225
BINDING SITE FOR RESIDUE EOH A 712
12
BC3
SOFTWARE
ASN A:176 , PRO B:17
BINDING SITE FOR RESIDUE EOH A 713
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3cova_ (A:)
1b: SCOP_d3covb_ (B:)
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)
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d3cova_
A:
1b
d3covb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3covA02 (A:186-288)
1b: CATH_3covB02 (B:186-288)
2a: CATH_3covA01 (A:3-185)
2b: CATH_3covB01 (B:2-185)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis.
(4)
1a
3covA02
A:186-288
1b
3covB02
B:186-288
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis.
(4)
2a
3covA01
A:3-185
2b
3covB01
B:2-185
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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