PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3COJ
Biol. Unit 6
Info
Asym.Unit (282 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (38 KB)
Biol.Unit 4 (39 KB)
Biol.Unit 5 (38 KB)
Biol.Unit 6 (38 KB)
Biol.Unit 7 (37 KB)
Biol.Unit 8 (37 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE BRCT DOMAINS OF HUMAN BRCA1 IN COMPLEX WITH A PHOSPHORYLATED PEPTIDE FROM HUMAN ACETYL-COA CARBOXYLASE 1
Authors
:
Y. Shen, L. Tong
Date
:
28 Mar 08 (Deposition) - 27 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.21
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,X
Biol. Unit 1: H,X (1x)
Biol. Unit 2: A,I (1x)
Biol. Unit 3: B,J (1x)
Biol. Unit 4: C,K (1x)
Biol. Unit 5: D,L (1x)
Biol. Unit 6: E,M (1x)
Biol. Unit 7: F,N (1x)
Biol. Unit 8: G,O (1x)
Keywords
:
Breast Cancer, Ovarian Cancer, Fatty Acid Biosynthesis, Lipid Synthesis, Obesity, Protein-Peptide Complex, Protein Protein Interaction, Anti-Oncogene, Cell Cycle, Disease Mutation, Dna Damage, Dna Repair, Dna-Binding, Metal-Binding, Nucleus, Phosphoprotein, Zinc-Finger, Alternative Promoter Usage, Atp- Binding, Biotin, Ligase, Manganese, Multifunctional Enzyme, Nucleotide-Binding, Antitumor Protein-Ligase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Shen, L. Tong
Structural Evidence For Direct Interactions Between The Brc Domains Of Human Brca1 And A Phospho-Peptide From Human Acc
Biochemistry V. 47 5767 2008
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
1b: PHOSPHOSERINE (SEPb)
1c: PHOSPHOSERINE (SEPc)
1d: PHOSPHOSERINE (SEPd)
1e: PHOSPHOSERINE (SEPe)
1f: PHOSPHOSERINE (SEPf)
1g: PHOSPHOSERINE (SEPg)
1h: PHOSPHOSERINE (SEPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(48, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_070494 (S1651F, chain E, )
02: VAR_070495 (S1651P, chain E, )
03: VAR_007795 (M1652I, chain E, )
04: VAR_070496 (S1655F, chain E, )
05: VAR_052080 (F1662C, chain E, )
06: VAR_020700 (V1665M, chain E, )
07: VAR_063902 (T1685A, chain E, )
08: VAR_063903 (T1685I, chain E, )
09: VAR_070497 (H1686Q, chain E, )
10: VAR_070498 (H1686R, chain E, )
11: VAR_063904 (M1689R, chain E, )
12: VAR_020701 (K1690Q, chain E, )
13: VAR_070500 (T1691I, chain E, )
14: VAR_008763 (D1692N, chain E, )
15: VAR_020702 (C1697R, chain E, )
16: VAR_070501 (R1699Q, chain E, )
17: VAR_020703 (R1699W, chain E, )
18: VAR_070502 (G1706A, chain E, )
19: VAR_063905 (G1706E, chain E, )
20: VAR_007796 (A1708E, chain E, )
21: VAR_007797 (V1713G, chain E, )
22: VAR_063906 (S1715R, chain E, )
23: VAR_070503 (W1718C, chain E, )
24: VAR_070504 (T1720A, chain E, )
25: VAR_070505 (E1735K, chain E, )
26: VAR_070506 (V1736A, chain E, )
27: VAR_063907 (G1738R, chain E, )
28: VAR_070507 (D1739G, chain E, )
29: VAR_070508 (D1739V, chain E, )
30: VAR_070509 (H1746Q, chain E, )
31: VAR_007798 (P1749R, chain E, )
32: VAR_070510 (R1753T, chain E, )
33: VAR_063908 (L1764P, chain E, )
34: VAR_063909 (I1766S, chain E, )
35: VAR_070511 (C1767S, chain E, )
36: VAR_070512 (G1770V, chain E, )
37: VAR_063212 (M1775K, chain E, )
38: VAR_007799 (M1775R, chain E, )
39: VAR_008764 (P1776S, chain E, )
40: VAR_070513 (W1782C, chain E, )
41: VAR_020704 (L1786P, chain E, )
42: VAR_063910 (G1788V, chain E, )
43: VAR_070514 (A1789T, chain E, )
44: VAR_070515 (E1794D, chain E, )
45: VAR_070516 (V1804D, chain E, )
46: VAR_070517 (P1812R, chain E, )
47: VAR_008765 (P1812S, chain E, )
48: VAR_070518 (W1837R, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070494
S
1651
F
BRCA1_HUMAN
Unclassified
---
E
S
1651
F
02
UniProt
VAR_070495
S
1651
P
BRCA1_HUMAN
Unclassified
---
E
S
1651
P
03
UniProt
VAR_007795
M
1652
I
BRCA1_HUMAN
Polymorphism
1799967
E
M
1652
I
04
UniProt
VAR_070496
S
1655
F
BRCA1_HUMAN
Unclassified
---
E
S
1655
F
05
UniProt
VAR_052080
F
1662
C
BRCA1_HUMAN
Polymorphism
28897695
E
F
1662
C
06
UniProt
VAR_020700
V
1665
M
BRCA1_HUMAN
Polymorphism
---
E
V
1665
M
07
UniProt
VAR_063902
T
1685
A
BRCA1_HUMAN
Unclassified
---
E
T
1685
A
08
UniProt
VAR_063903
T
1685
I
BRCA1_HUMAN
Unclassified
---
E
T
1685
I
09
UniProt
VAR_070497
H
1686
Q
BRCA1_HUMAN
Unclassified
---
E
H
1686
Q
10
UniProt
VAR_070498
H
1686
R
BRCA1_HUMAN
Unclassified
---
E
H
1686
R
11
UniProt
VAR_063904
M
1689
R
BRCA1_HUMAN
Unclassified
---
E
M
1689
R
12
UniProt
VAR_020701
K
1690
Q
BRCA1_HUMAN
Unclassified
---
E
K
1690
Q
13
UniProt
VAR_070500
T
1691
I
BRCA1_HUMAN
Unclassified
---
E
T
1691
I
14
UniProt
VAR_008763
D
1692
N
BRCA1_HUMAN
Unclassified
---
E
D
1692
N
15
UniProt
VAR_020702
C
1697
R
BRCA1_HUMAN
Disease (OC)
---
E
C
1697
R
16
UniProt
VAR_070501
R
1699
Q
BRCA1_HUMAN
Unclassified
---
E
R
1699
Q
17
UniProt
VAR_020703
R
1699
W
BRCA1_HUMAN
Disease (OC)
---
E
R
1699
W
18
UniProt
VAR_070502
G
1706
A
BRCA1_HUMAN
Unclassified
---
E
G
1706
A
19
UniProt
VAR_063905
G
1706
E
BRCA1_HUMAN
Unclassified
80356860
E
G
1706
E
20
UniProt
VAR_007796
A
1708
E
BRCA1_HUMAN
Disease (BC)
28897696
E
A
1708
E
21
UniProt
VAR_007797
V
1713
G
BRCA1_HUMAN
Polymorphism
---
E
V
1713
G
22
UniProt
VAR_063906
S
1715
R
BRCA1_HUMAN
Unclassified
---
E
S
1715
R
23
UniProt
VAR_070503
W
1718
C
BRCA1_HUMAN
Unclassified
---
E
W
1718
C
24
UniProt
VAR_070504
T
1720
A
BRCA1_HUMAN
Unclassified
---
E
T
1720
A
25
UniProt
VAR_070505
E
1735
K
BRCA1_HUMAN
Unclassified
---
E
E
1735
K
26
UniProt
VAR_070506
V
1736
A
BRCA1_HUMAN
Unclassified
---
E
V
1736
A
27
UniProt
VAR_063907
G
1738
R
BRCA1_HUMAN
Unclassified
---
E
G
1738
R
28
UniProt
VAR_070507
D
1739
G
BRCA1_HUMAN
Unclassified
---
E
D
1739
G
29
UniProt
VAR_070508
D
1739
V
BRCA1_HUMAN
Unclassified
---
E
D
1739
V
30
UniProt
VAR_070509
H
1746
Q
BRCA1_HUMAN
Unclassified
---
E
H
1746
Q
31
UniProt
VAR_007798
P
1749
R
BRCA1_HUMAN
Unclassified
---
E
P
1749
R
32
UniProt
VAR_070510
R
1753
T
BRCA1_HUMAN
Unclassified
---
E
R
1753
T
33
UniProt
VAR_063908
L
1764
P
BRCA1_HUMAN
Unclassified
---
E
L
1764
P
34
UniProt
VAR_063909
I
1766
S
BRCA1_HUMAN
Unclassified
---
E
I
1766
S
35
UniProt
VAR_070511
C
1767
S
BRCA1_HUMAN
Unclassified
---
E
C
1767
S
36
UniProt
VAR_070512
G
1770
V
BRCA1_HUMAN
Unclassified
---
E
G
1770
V
37
UniProt
VAR_063212
M
1775
K
BRCA1_HUMAN
Disease (BC)
---
E
M
1775
K
38
UniProt
VAR_007799
M
1775
R
BRCA1_HUMAN
Disease (BC)
---
E
M
1775
R
39
UniProt
VAR_008764
P
1776
S
BRCA1_HUMAN
Unclassified
1800757
E
P
1776
S
40
UniProt
VAR_070513
W
1782
C
BRCA1_HUMAN
Unclassified
---
E
W
1782
C
41
UniProt
VAR_020704
L
1786
P
BRCA1_HUMAN
Unclassified
---
E
L
1786
P
42
UniProt
VAR_063910
G
1788
V
BRCA1_HUMAN
Unclassified
---
E
G
1788
V
43
UniProt
VAR_070514
A
1789
T
BRCA1_HUMAN
Unclassified
---
E
A
1789
T
44
UniProt
VAR_070515
E
1794
D
BRCA1_HUMAN
Unclassified
---
E
E
1794
D
45
UniProt
VAR_070516
V
1804
D
BRCA1_HUMAN
Unclassified
---
E
V
1804
D
46
UniProt
VAR_070517
P
1812
R
BRCA1_HUMAN
Unclassified
---
E
P
1812
R
47
UniProt
VAR_008765
P
1812
S
BRCA1_HUMAN
Unclassified
1800751
E
P
1812
S
48
UniProt
VAR_070518
W
1837
R
BRCA1_HUMAN
Unclassified
---
E
W
1837
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BRCT (E:1756-1855)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
BRCA1_HUMAN
1642-1736
1756-1855
1
-
-
-
-
-
E:1756-1855
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d3coja1 (A:1650-1756)
1b: SCOP_d3coja2 (A:1760-1855)
1c: SCOP_d3cojb1 (B:1650-1756)
1d: SCOP_d3cojb2 (B:1760-1855)
1e: SCOP_d3cojc1 (C:1650-1756)
1f: SCOP_d3cojc2 (C:1760-1855)
1g: SCOP_d3cojd1 (D:1650-1756)
1h: SCOP_d3cojd2 (D:1760-1855)
1i: SCOP_d3coje1 (E:1650-1756)
1j: SCOP_d3coje2 (E:1760-1855)
1k: SCOP_d3cojf1 (F:1650-1756)
1l: SCOP_d3cojf2 (F:1760-1855)
1m: SCOP_d3cojg1 (G:1650-1756)
1n: SCOP_d3cojg2 (G:1760-1855)
1o: SCOP_d3cojx1 (X:1650-1756)
1p: SCOP_d3cojx2 (X:1760-1855)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
BRCT domain
(29)
Superfamily
:
BRCT domain
(29)
Family
:
BRCT domain
(15)
Protein domain
:
Breast cancer associated protein, BRCA1
(15)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d3coja1
A:1650-1756
1b
d3coja2
A:1760-1855
1c
d3cojb1
B:1650-1756
1d
d3cojb2
B:1760-1855
1e
d3cojc1
C:1650-1756
1f
d3cojc2
C:1760-1855
1g
d3cojd1
D:1650-1756
1h
d3cojd2
D:1760-1855
1i
d3coje1
E:1650-1756
1j
d3coje2
E:1760-1855
1k
d3cojf1
F:1650-1756
1l
d3cojf2
F:1760-1855
1m
d3cojg1
G:1650-1756
1n
d3cojg2
G:1760-1855
1o
d3cojx1
X:1650-1756
1p
d3cojx2
X:1760-1855
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_3cojA02 (A:1756-1859)
1b: CATH_3cojE02 (E:1756-1859)
1c: CATH_3cojF02 (F:1756-1859)
1d: CATH_3cojX02 (X:1756-1859)
1e: CATH_3cojG02 (G:1756-1859)
1f: CATH_3cojD01 (D:1649-1755)
1g: CATH_3cojE01 (E:1649-1755)
1h: CATH_3cojF01 (F:1649-1755)
1i: CATH_3cojA01 (A:1648-1755)
1j: CATH_3cojB01 (B:1648-1755)
1k: CATH_3cojC01 (C:1648-1755)
1l: CATH_3cojG01 (G:1648-1755)
1m: CATH_3cojX01 (X:1648-1755)
1n: CATH_3cojB02 (B:1756-1859)
1o: CATH_3cojC02 (C:1756-1859)
1p: CATH_3cojD02 (D:1756-1859)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.10190, no name defined]
(24)
Human (Homo sapiens)
(22)
1a
3cojA02
A:1756-1859
1b
3cojE02
E:1756-1859
1c
3cojF02
F:1756-1859
1d
3cojX02
X:1756-1859
1e
3cojG02
G:1756-1859
1f
3cojD01
D:1649-1755
1g
3cojE01
E:1649-1755
1h
3cojF01
F:1649-1755
1i
3cojA01
A:1648-1755
1j
3cojB01
B:1648-1755
1k
3cojC01
C:1648-1755
1l
3cojG01
G:1648-1755
1m
3cojX01
X:1648-1755
1n
3cojB02
B:1756-1859
1o
3cojC02
C:1756-1859
1p
3cojD02
D:1756-1859
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain M
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (282 KB)
Header - Asym.Unit
Biol.Unit 1 (38 KB)
Header - Biol.Unit 1
Biol.Unit 2 (38 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
Biol.Unit 4 (39 KB)
Header - Biol.Unit 4
Biol.Unit 5 (38 KB)
Header - Biol.Unit 5
Biol.Unit 6 (38 KB)
Header - Biol.Unit 6
Biol.Unit 7 (37 KB)
Header - Biol.Unit 7
Biol.Unit 8 (37 KB)
Header - Biol.Unit 8
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3COJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help