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3CMW
Biol. Unit 2
Info
Asym.Unit (510 KB)
Biol.Unit 1 (254 KB)
Biol.Unit 2 (255 KB)
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(1)
Title
:
MECHANISM OF HOMOLOGOUS RECOMBINATION FROM THE RECA-SSDNA/DSDNA STRUCTURES
Authors
:
N. P. Pavletich
Date
:
24 Mar 08 (Deposition) - 20 May 08 (Release) - 21 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Homologous Recombination, Recombination-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Chen, H. Yang, N. P. Pavletich
Mechanism Of Homologous Recombination From The Reca-Ssdna/Dsdna Structures.
Nature V. 453 489 2008
[
close entry info
]
Hetero Components
(2, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
2a: TETRAFLUOROALUMINATE ION (ALFa)
2b: TETRAFLUOROALUMINATE ION (ALFb)
2c: TETRAFLUOROALUMINATE ION (ALFc)
2d: TETRAFLUOROALUMINATE ION (ALFd)
2e: TETRAFLUOROALUMINATE ION (ALFe)
2f: TETRAFLUOROALUMINATE ION (ALFf)
2g: TETRAFLUOROALUMINATE ION (ALFg)
2h: TETRAFLUOROALUMINATE ION (ALFh)
2i: TETRAFLUOROALUMINATE ION (ALFi)
2j: TETRAFLUOROALUMINATE ION (ALFj)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
5
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ALF
5
Ligand/Ion
TETRAFLUOROALUMINATE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC8 (SOFTWARE)
12: CC9 (SOFTWARE)
13: DC1 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
THR C:73 , GLU C:96
BINDING SITE FOR RESIDUE MG C 500
02
BC3
SOFTWARE
GLU C:68 , SER C:69 , LYS C:72 , GLU C:96 , PHE C:1217 , LYS C:1248 , LYS C:1250
BINDING SITE FOR RESIDUE ALF C 501
03
BC4
SOFTWARE
THR C:1073 , GLU C:1096
BINDING SITE FOR RESIDUE MG C 1500
04
BC5
SOFTWARE
GLU C:1068 , SER C:1069 , LYS C:1072 , GLU C:1096 , PHE C:2217 , LYS C:2248 , LYS C:2250
BINDING SITE FOR RESIDUE ALF C 1501
05
BC6
SOFTWARE
THR C:2073 , GLU C:2096
BINDING SITE FOR RESIDUE MG C 2500
06
BC7
SOFTWARE
GLU C:2068 , SER C:2069 , LYS C:2072 , GLU C:2096 , PHE C:3217 , LYS C:3248 , LYS C:3250
BINDING SITE FOR RESIDUE ALF C 2501
07
BC8
SOFTWARE
THR C:3073
BINDING SITE FOR RESIDUE MG C 3500
08
BC9
SOFTWARE
GLU C:3068 , SER C:3069 , LYS C:3072 , GLU C:3096 , PHE C:4217 , LYS C:4248 , LYS C:4250
BINDING SITE FOR RESIDUE ALF C 3501
09
CC1
SOFTWARE
THR C:4073 , GLU C:4096
BINDING SITE FOR RESIDUE MG C 4500
10
CC2
SOFTWARE
GLU C:4068 , SER C:4069 , LYS C:4072 , GLU C:4096
BINDING SITE FOR RESIDUE ALF C 4501
11
CC8
SOFTWARE
SER C:69 , SER C:70 , GLY C:71 , LYS C:72 , THR C:73 , THR C:74 , ASP C:100 , TYR C:103 , SER C:240 , TYR C:264 , ASN C:1249 , LYS C:1250 , ILE C:1251 , ALA C:1252 , ALA C:1253 , PRO C:1254
BINDING SITE FOR RESIDUE ADP C 502
12
CC9
SOFTWARE
SER C:1069 , SER C:1070 , GLY C:1071 , LYS C:1072 , THR C:1073 , THR C:1074 , ASP C:1100 , TYR C:1103 , SER C:1240 , TYR C:1264 , ASN C:2249 , LYS C:2250 , ILE C:2251 , ALA C:2252 , ALA C:2253 , PRO C:2254
BINDING SITE FOR RESIDUE ADP C 1502
13
DC1
SOFTWARE
SER C:2069 , SER C:2070 , GLY C:2071 , LYS C:2072 , THR C:2073 , THR C:2074 , ASP C:2100 , TYR C:2103 , SER C:2240 , TYR C:2264 , ASN C:3249 , LYS C:3250 , ILE C:3251 , ALA C:3252 , ALA C:3253 , PRO C:3254
BINDING SITE FOR RESIDUE ADP C 2502
14
DC2
SOFTWARE
SER C:3069 , SER C:3070 , GLY C:3071 , LYS C:3072 , THR C:3073 , THR C:3074 , ASP C:3100 , TYR C:3103 , SER C:3240 , TYR C:3264 , ASN C:4249 , LYS C:4250 , ILE C:4251 , ALA C:4252 , ALA C:4253 , PRO C:4254
BINDING SITE FOR RESIDUE ADP C 3502
15
DC3
SOFTWARE
LYS A:2294 , GLY A:2295 , SER C:4069 , SER C:4070 , GLY C:4071 , LYS C:4072 , THR C:4073 , THR C:4074 , ASP C:4100 , TYR C:4103 , TYR C:4264
BINDING SITE FOR RESIDUE ADP C 4502
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: RECA_2 (C:1036-1195)
2: RECA_3 (C:1200-1273)
3: RECA_1 (C:1214-1222)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECA_2
PS50162
RecA family profile 1.
RECA_ECOLI
37-196
1
-
C:1036-1195
2
RECA_3
PS50163
RecA family profile 2.
RECA_ECOLI
201-274
1
-
C:1200-1273
3
RECA_1
PS00321
recA signature.
RECA_ECOLI
215-223
1
-
C:1214-1222
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Protein & NOT Site
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Chain C
Chain D
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (510 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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