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3CMU
Asym. Unit
Info
Asym.Unit (308 KB)
Biol.Unit 1 (300 KB)
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(1)
Title
:
MECHANISM OF HOMOLOGOUS RECOMBINATION FROM THE RECA-SSDNA/DSDNA STRUCTURES
Authors
:
N. P. Pavletich
Date
:
24 Mar 08 (Deposition) - 20 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Homologous Recombination, Recombination/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Chen, H. Yang, N. P. Pavletich
Mechanism Of Homologous Recombination From The Reca-Ssdna/Dsdna Structures.
Nature V. 453 489 2008
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
2a: TETRAFLUOROALUMINATE ION (ALFa)
2b: TETRAFLUOROALUMINATE ION (ALFb)
2c: TETRAFLUOROALUMINATE ION (ALFc)
2d: TETRAFLUOROALUMINATE ION (ALFd)
2e: TETRAFLUOROALUMINATE ION (ALFe)
2f: TETRAFLUOROALUMINATE ION (ALFf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
6
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ALF
6
Ligand/Ion
TETRAFLUOROALUMINATE ION
3
MG
6
Ligand/Ion
MAGNESIUM ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:73 , GLU A:96 , ASP A:144 , LYS A:1250
BINDING SITE FOR RESIDUE MG A 500
02
AC2
SOFTWARE
GLU A:68 , SER A:69 , LYS A:72 , THR A:73 , GLU A:96 , PHE A:1217 , LYS A:1248 , LYS A:1250
BINDING SITE FOR RESIDUE ALF A 501
03
AC3
SOFTWARE
THR A:1073 , GLU A:1096 , LYS A:2250
BINDING SITE FOR RESIDUE MG A 1500
04
AC4
SOFTWARE
GLU A:1068 , SER A:1069 , LYS A:1072 , THR A:1073 , GLU A:1096 , PHE A:2217 , LYS A:2248 , LYS A:2250
BINDING SITE FOR RESIDUE ALF A 1501
05
AC5
SOFTWARE
THR A:2073 , GLU A:2096 , LYS A:3250
BINDING SITE FOR RESIDUE MG A 2500
06
AC6
SOFTWARE
GLU A:2068 , SER A:2069 , LYS A:2072 , THR A:2073 , GLU A:2096 , PHE A:3217 , LYS A:3248 , LYS A:3250
BINDING SITE FOR RESIDUE ALF A 2501
07
AC7
SOFTWARE
THR A:3073 , GLU A:3096 , LYS A:4250
BINDING SITE FOR RESIDUE MG A 3500
08
AC8
SOFTWARE
GLU A:3068 , SER A:3069 , LYS A:3072 , THR A:3073 , GLU A:3096 , PHE A:4217 , LYS A:4248 , LYS A:4250
BINDING SITE FOR RESIDUE ALF A 3501
09
AC9
SOFTWARE
THR A:4073 , GLU A:4096 , LYS A:5250
BINDING SITE FOR RESIDUE MG A 4500
10
BC1
SOFTWARE
GLU A:4068 , SER A:4069 , LYS A:4072 , THR A:4073 , GLU A:4096 , PHE A:5217 , LYS A:5248 , LYS A:5250
BINDING SITE FOR RESIDUE ALF A 4501
11
BC2
SOFTWARE
THR A:5073 , GLU A:5096
BINDING SITE FOR RESIDUE MG A 5500
12
BC3
SOFTWARE
GLU A:5068 , SER A:5069 , LYS A:5072 , THR A:5073 , GLU A:5096
BINDING SITE FOR RESIDUE ALF A 5501
13
BC4
SOFTWARE
SER A:69 , SER A:70 , GLY A:71 , LYS A:72 , THR A:73 , THR A:74 , ASP A:100 , TYR A:103 , SER A:240 , TYR A:264 , ASN A:1249 , LYS A:1250 , ILE A:1251 , ALA A:1252 , ALA A:1253 , PRO A:1254
BINDING SITE FOR RESIDUE ADP A 502
14
BC5
SOFTWARE
SER A:1069 , SER A:1070 , GLY A:1071 , LYS A:1072 , THR A:1073 , THR A:1074 , ASP A:1100 , TYR A:1103 , SER A:1240 , TYR A:1264 , ASN A:2249 , LYS A:2250 , ILE A:2251 , ALA A:2252 , ALA A:2253 , PRO A:2254
BINDING SITE FOR RESIDUE ADP A 1502
15
BC6
SOFTWARE
PRO A:2067 , GLU A:2068 , SER A:2069 , SER A:2070 , GLY A:2071 , LYS A:2072 , THR A:2073 , THR A:2074 , ASP A:2100 , TYR A:2103 , SER A:2240 , TYR A:2264 , ASN A:3249 , LYS A:3250 , ILE A:3251 , ALA A:3252 , ALA A:3253 , PRO A:3254
BINDING SITE FOR RESIDUE ADP A 2502
16
BC7
SOFTWARE
SER A:3069 , SER A:3070 , GLY A:3071 , LYS A:3072 , THR A:3073 , THR A:3074 , ASP A:3100 , TYR A:3103 , SER A:3240 , TYR A:3264 , ASN A:4249 , LYS A:4250 , ILE A:4251 , ALA A:4252 , ALA A:4253 , PRO A:4254
BINDING SITE FOR RESIDUE ADP A 3502
17
BC8
SOFTWARE
SER A:4069 , SER A:4070 , GLY A:4071 , LYS A:4072 , THR A:4073 , THR A:4074 , ASP A:4100 , TYR A:4103 , SER A:4240 , TYR A:4264 , ASN A:5249 , LYS A:5250 , ILE A:5251 , ALA A:5252 , ALA A:5253 , PRO A:5254
BINDING SITE FOR RESIDUE ADP A 4502
18
BC9
SOFTWARE
GLU A:5068 , SER A:5069 , SER A:5070 , GLY A:5071 , LYS A:5072 , THR A:5073 , THR A:5074 , ASP A:5100 , TYR A:5103 , SER A:5240 , TYR A:5264
BINDING SITE FOR RESIDUE ADP A 5502
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: RECA_2 (A:1036-1195)
2: RECA_3 (A:1200-1273)
3: RECA_1 (A:1214-1222)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECA_2
PS50162
RecA family profile 1.
RECA_ECOLI
37-196
1
A:1036-1195
2
RECA_3
PS50163
RecA family profile 2.
RECA_ECOLI
201-274
1
A:1200-1273
3
RECA_1
PS00321
recA signature.
RECA_ECOLI
215-223
1
A:1214-1222
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (308 KB)
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