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3CLP
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
M. LOTI CYCLIC-NUCLEOTIDE BINDING DOMAIN MUTANT 2
Authors
:
G. M. Clayton, S. L. Altieri, L. R. Thomas, J. H. Morais-Cabral
Date
:
19 Mar 08 (Deposition) - 05 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Mlotik1 Cyclic-Nucleotide Binding Domain Mutant 2. Cyclic- Amp Bound, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. L. Altieri, G. M. Clayton, W. R. Silverman, A. O. Olivares, E. M. De La Cruz, L. R. Thomas, J. H. Morais-Cabral
Structural And Energetic Analysis Of Activation By A Cyclic Nucleotide Binding Domain.
J. Mol. Biol. V. 381 655 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPa)
1b: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPb)
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No.
Name
Count
Type
Full Name
1
CMP
2
Ligand/Ion
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:282 , THR A:284 , PHE A:296 , GLY A:297 , GLU A:298 , MET A:299 , ALA A:300 , GLU A:307 , SER A:308 , ALA A:309 , VAL A:311 , ARG A:348 , HOH A:364 , HOH A:370 , HOH A:374 , HOH A:394
BINDING SITE FOR RESIDUE CMP A 1
2
AC2
SOFTWARE
HOH C:101 , HOH C:107 , HOH C:132 , VAL C:282 , VAL C:288 , PHE C:296 , GLY C:297 , GLU C:298 , MET C:299 , ALA C:300 , GLU C:307 , SER C:308 , ALA C:309 , VAL C:311 , ARG C:348
BINDING SITE FOR RESIDUE CMP C 2
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:235-348,C:235-348)
2: CNMP_BINDING_1 (A:262-278,C:262-278)
3: CNMP_BINDING_2 (A:296-313,C:296-313)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
CNGK1_RHILO
235-348
2
A:235-348
C:235-348
2
CNMP_BINDING_1
PS00888
Cyclic nucleotide-binding domain signature 1.
CNGK1_RHILO
262-278
2
A:262-278
C:262-278
3
CNMP_BINDING_2
PS00889
Cyclic nucleotide-binding domain signature 2.
CNGK1_RHILO
296-313
2
A:296-313
C:296-313
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
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1a: SCOP_d3clpa_ (A:)
1b: SCOP_d3clpc_ (C:)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
cAMP-binding domain
(78)
Protein domain
:
automated matches
(22)
Rhizobium loti [TaxId: 381]
(3)
1a
d3clpa_
A:
1b
d3clpc_
C:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_3clpC00 (C:218-350)
1b: CATH_3clpA00 (A:218-349)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Rhizobium loti.
(2)
1a
3clpC00
C:218-350
1b
3clpA00
A:218-349
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Pfam Domains
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