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3CL1
Asym. Unit
Info
Asym.Unit (48 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
M. LOTI CYCLIC-NUCLEOTIDE BINDING DOMAIN, CYCLIC-GMP BOUND
Authors
:
G. M. Clayton, S. L. Alteiri, L. R. Thomas, J. H. Morais-Cabral
Date
:
18 Mar 08 (Deposition) - 05 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Cyclic-Nucleotide Binding, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. L. Altieri, G. M. Clayton, W. R. Silverman, A. O. Olivares, E. M. De La Cruz, L. R. Thomas, J. H. Morais-Cabral
Structural And Energetic Analysis Of Activation By A Cyclic Nucleotide Binding Domain.
J. Mol. Biol. V. 381 655 2008
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
3a: CYCLIC GUANOSINE MONOPHOSPHATE (PCGa)
3b: CYCLIC GUANOSINE MONOPHOSPHATE (PCGb)
4a: N-PROPANOL (POLa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
K
3
Ligand/Ion
POTASSIUM ION
3
PCG
2
Ligand/Ion
CYCLIC GUANOSINE MONOPHOSPHATE
4
POL
1
Ligand/Ion
N-PROPANOL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:294 , PHE A:295 , ARG A:348
BINDING SITE FOR RESIDUE CL A 1
2
AC2
SOFTWARE
ARG A:348
BINDING SITE FOR RESIDUE CL A 2
3
AC3
SOFTWARE
ALA A:250 , HIS A:323 , ASP A:326
BINDING SITE FOR RESIDUE K A 356
4
AC4
SOFTWARE
ALA B:232
BINDING SITE FOR RESIDUE K B 2
5
AC5
SOFTWARE
ALA B:283 , ALA B:309 , THR B:310
BINDING SITE FOR RESIDUE K B 3
6
AC6
SOFTWARE
THR B:284 , PHE B:296 , GLY B:297 , GLU B:298 , MET B:299 , ALA B:300 , ARG B:307 , SER B:308 , ALA B:309 , ARG B:348
BINDING SITE FOR RESIDUE PCG B 402
7
AC7
SOFTWARE
THR A:284 , PHE A:296 , GLY A:297 , GLU A:298 , MET A:299 , ALA A:300 , ARG A:307 , SER A:308 , ALA A:309 , ARG A:348
BINDING SITE FOR RESIDUE PCG A 402
8
AC8
SOFTWARE
THR B:310
BINDING SITE FOR RESIDUE POL B 200
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:235-348,B:235-348)
2: CNMP_BINDING_1 (A:262-278,B:262-278)
3: CNMP_BINDING_2 (A:296-313,B:296-313)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
CNGK1_RHILO
235-348
2
A:235-348
B:235-348
2
CNMP_BINDING_1
PS00888
Cyclic nucleotide-binding domain signature 1.
CNGK1_RHILO
262-278
2
A:262-278
B:262-278
3
CNMP_BINDING_2
PS00889
Cyclic nucleotide-binding domain signature 2.
CNGK1_RHILO
296-313
2
A:296-313
B:296-313
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3cl1a_ (A:)
1b: SCOP_d3cl1b_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
cAMP-binding domain
(78)
Protein domain
:
automated matches
(22)
Rhizobium loti [TaxId: 381]
(3)
1a
d3cl1a_
A:
1b
d3cl1b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3cl1B00 (B:219-349)
1b: CATH_3cl1A00 (A:220-349)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Rhizobium loti.
(2)
1a
3cl1B00
B:219-349
1b
3cl1A00
A:220-349
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (48 KB)
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Header - Biol.Unit 1
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