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3CK7
Biol. Unit 3
Info
Asym.Unit (356 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (92 KB)
Biol.Unit 4 (90 KB)
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(1)
Title
:
B. THETAIOTAOMICRON SUSD WITH ALPHA-CYCLODEXTRIN
Authors
:
N. M. Koropatkin, E. C. Martens, J. I. Gordon, T. J. Smith
Date
:
14 Mar 08 (Deposition) - 01 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Tpr Repeat, Carbohydrate Binding, Starch Binding, Sugar Binding Protein
(Keyword Search:
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Reference
:
N. M. Koropatkin, E. C. Martens, J. I. Gordon, T. J. Smith
Starch Catabolism By A Prominent Human Gut Symbiont Is Directed By The Recognition Of Amylose Helices.
Structure V. 16 1105 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ALPHA-CYCLODEXTRIN (CYCLOHEXA-AMYL... (ACXa)
1b: ALPHA-CYCLODEXTRIN (CYCLOHEXA-AMYL... (ACXb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
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No.
Name
Count
Type
Full Name
1
ACX
1
Ligand/Ion
ALPHA-CYCLODEXTRIN (CYCLOHEXA-AMYLOSE)
2
CA
-1
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG C:81 , TRP C:96 , TRP C:98 , ASN C:101 , TYR C:296 , TRP C:320 , CYS C:322 , ASP D:73 , ARG D:81 , TRP D:98 , ASN D:101 , ASN D:318 , TRP D:320 , CYS D:322
BINDING SITE FOR RESIDUE ACX C 689
2
AC3
SOFTWARE
ASP C:273 , GLN C:288 , ASP C:430 , ASP C:432
BINDING SITE FOR RESIDUE CA C 700
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ck7a1 (A:42-551)
1b: SCOP_d3ck7b_ (B:)
1c: SCOP_d3ck7c_ (C:)
1d: SCOP_d3ck7d_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
SusD-like
(7)
Protein domain
:
Starch utilization system protein SusD
(5)
Bacteroides thetaiotaomicron [TaxId: 818]
(5)
1a
d3ck7a1
A:42-551
1b
d3ck7b_
B:
1c
d3ck7c_
C:
1d
d3ck7d_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3ck7A02 (A:210-307,A:412-490)
1b: CATH_3ck7B02 (B:210-307,B:412-490)
1c: CATH_3ck7C02 (C:210-307,C:412-490)
1d: CATH_3ck7D02 (D:210-307,D:412-490)
2a: CATH_3ck7A03 (A:308-411)
2b: CATH_3ck7B03 (B:308-411)
2c: CATH_3ck7C03 (C:308-411)
2d: CATH_3ck7D03 (D:308-411)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.10, no name defined]
(42)
Bacteroides thetaiotaomicron vpi-5482. Organism_taxid: 226186. Strain:vpi-5482.
(4)
1a
3ck7A02
A:210-307,A:412-490
1b
3ck7B02
B:210-307,B:412-490
1c
3ck7C02
C:210-307,C:412-490
1d
3ck7D02
D:210-307,D:412-490
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
TPR-like
(5)
Homologous Superfamily
:
SusD-like
(5)
Bacteroides thetaiotaomicron vpi-5482. Organism_taxid: 226186. Strain:vpi-5482.
(4)
2a
3ck7A03
A:308-411
2b
3ck7B03
B:308-411
2c
3ck7C03
C:308-411
2d
3ck7D03
D:308-411
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Pfam Domains
(0, 0)
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (356 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (93 KB)
Header - Biol.Unit 2
Biol.Unit 3 (92 KB)
Header - Biol.Unit 3
Biol.Unit 4 (90 KB)
Header - Biol.Unit 4
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