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3CK5
Biol. Unit 2
Info
Asym.Unit (234 KB)
Biol.Unit 1 (453 KB)
Biol.Unit 2 (435 KB)
Biol.Unit 3 (117 KB)
Biol.Unit 4 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A RACEMASE FROM STREPTOMYCES COELICOLOR A3(2) WITH BOUND MAGNESIUM
Authors
:
K. N. Rao, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
14 Mar 08 (Deposition) - 25 Mar 08 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (4x)
Biol. Unit 2: C,D (4x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: C,D (1x)
Keywords
:
Crystal Structure, Racemase, Magnesium, Streptomyces Coelicolor A3(2), 9301A, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
K. N. Rao, S. K. Burley, S. Swaminathan
Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2) With Bound Magnesium.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 76)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
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Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
MSE
76
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
LYS C:166 , ASP C:197 , GLU C:223 , GLU C:249
BINDING SITE FOR RESIDUE MG C 400
2
AC4
SOFTWARE
ASP D:197 , ASN D:199 , GLU D:223 , GLU D:249
BINDING SITE FOR RESIDUE MG D 400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ck5a1 (A:3-129)
1b: SCOP_d3ck5c1 (C:3-129)
1c: SCOP_d3ck5d1 (D:3-129)
1d: SCOP_d3ck5b1 (B:3-129)
2a: SCOP_d3ck5a2 (A:130-362)
2b: SCOP_d3ck5c2 (C:130-362)
2c: SCOP_d3ck5d2 (D:130-360)
2d: SCOP_d3ck5b2 (B:130-362)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Streptomyces coelicolor [TaxId: 100226]
(3)
1a
d3ck5a1
A:3-129
1b
d3ck5c1
C:3-129
1c
d3ck5d1
D:3-129
1d
d3ck5b1
B:3-129
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Streptomyces coelicolor [TaxId: 100226]
(3)
2a
d3ck5a2
A:130-362
2b
d3ck5c2
C:130-362
2c
d3ck5d2
D:130-360
2d
d3ck5b2
B:130-362
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3ck5A01 (A:3-120,A:354-362)
1b: CATH_3ck5D01 (D:3-120,D:354-360)
1c: CATH_3ck5B01 (B:3-120,B:354-362)
1d: CATH_3ck5C01 (C:3-120,C:354-362)
2a: CATH_3ck5A02 (A:121-353)
2b: CATH_3ck5C02 (C:121-353)
2c: CATH_3ck5D02 (D:121-353)
2d: CATH_3ck5B02 (B:121-353)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Streptomyces coelicolor a3(2). Organism_taxid: 100226. Strain: a3(2),m145.
(3)
1a
3ck5A01
A:3-120,A:354-362
1b
3ck5D01
D:3-120,D:354-360
1c
3ck5B01
B:3-120,B:354-362
1d
3ck5C01
C:3-120,C:354-362
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Streptomyces coelicolor a3(2). Organism_taxid: 100226. Strain: a3(2),m145.
(3)
2a
3ck5A02
A:121-353
2b
3ck5C02
C:121-353
2c
3ck5D02
D:121-353
2d
3ck5B02
B:121-353
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Pfam Domains
(0, 0)
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Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (453 KB)
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Biol.Unit 3 (117 KB)
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