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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3CJJ
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RAGE LIGAND-BINDING DOMAIN
Authors
:
M. Koch, B. M. Dattilo, A. Schiefner, J. Diez, W. J. Chazin, G. Fritz
Date
:
13 Mar 08 (Deposition) - 24 Mar 09 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Membrane Protein, Signaling Protein, Immunoglobulin Domain, Glycoprotein, Membrane, Secreted, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Koch, S. Chitayat, B. M. Dattilo, A. Schiefner, J. Diez, W. J. Chazin G. Fritz
Structural Basis For Ligand Recognition And Activation Of Rage.
Structure V. 18 1342 2010
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
ZN
4
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (unknown)
02: AC2 (unknown)
03: AC3 (unknown)
04: AC4 (unknown)
05: AC5 (unknown)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
unknown
SER A:156 , TRP A:157 , HIS A:158 , PRO A:163 , HIS A:180 , PRO A:181 , GLU A:182 , HOH A:289
BINDING SITE FOR RESIDUE ACT A 1
02
AC2
unknown
HIS A:158 , HIS A:180 , GLU A:182 , HOH A:434
BINDING SITE FOR RESIDUE ZN A 241
03
AC3
unknown
HIS A:217 , HOH A:394 , HOH A:397 , HOH A:454
BINDING SITE FOR RESIDUE ZN A 2
04
AC4
unknown
GLU A:59 , ASP A:160 , ASP A:201 , HOH A:444 , HOH A:446 , HOH A:461 , HOH A:469
BINDING SITE FOR RESIDUE ZN A 3
05
AC5
unknown
ASP A:128 , HOH A:444 , HOH A:446 , HOH A:470
BINDING SITE FOR RESIDUE ZN A 4
06
AC6
SOFTWARE
ZN A:2 , SER A:156 , TRP A:157 , HIS A:158 , PRO A:163 , HIS A:180 , PRO A:181 , GLU A:182 , HOH A:289
BINDING SITE FOR RESIDUE ACT A 1
07
AC7
SOFTWARE
ACT A:1 , HIS A:158 , HIS A:180 , GLU A:182 , HOH A:434
BINDING SITE FOR RESIDUE ZN A 2
08
AC8
SOFTWARE
HIS A:217 , HOH A:394 , HOH A:397 , HOH A:454
BINDING SITE FOR RESIDUE ZN A 3
09
AC9
SOFTWARE
GLU A:59 , ASP A:160 , ASP A:201 , HOH A:444 , HOH A:446 , HOH A:461 , HOH A:469
BINDING SITE FOR RESIDUE ZN A 4
10
AD1
SOFTWARE
ASP A:128 , HOH A:444 , HOH A:446 , HOH A:470
BINDING SITE FOR RESIDUE ZN A 5
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024500 (G82S, chain A, )
2: VAR_011338 (Q100R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024500
G
82
S
RAGE_HUMAN
Polymorphism
2070600
A
G
82
S
2
UniProt
VAR_011338
Q
100
R
RAGE_HUMAN
Polymorphism
---
A
Q
100
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.33f (A:22-53)
Exon 1.34b (A:54-119)
Exon 1.35b (A:119-140)
Exon 1.36 (A:141-170)
Exon 1.37c (A:170-231)
Exon 1.37e (A:231-240)
View:
Select:
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All Exon Boundaries
1: Boundary 1.33a/1.33f
2: Boundary 1.33f/1.34b
3: Boundary 1.34b/1.35b
4: Boundary 1.35b/1.36
5: Boundary 1.36/1.37c
6: Boundary 1.37c/1.37e
7: Boundary 1.37e/1.38a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.33a
ENST00000375076
33a
ENSE00001633661
chr6:
32152101-32151948
154
RAGE_HUMAN
1-18
18
0
-
-
1.33f
ENST00000375076
33f
ENSE00001645680
chr6:
32151764-32151658
107
RAGE_HUMAN
18-53
36
1
A:22-53
32
1.34b
ENST00000375076
34b
ENSE00001790815
chr6:
32151527-32151332
196
RAGE_HUMAN
54-119
66
1
A:54-119
66
1.35b
ENST00000375076
35b
ENSE00001779959
chr6:
32151165-32151101
65
RAGE_HUMAN
119-140
22
1
A:119-140
22
1.36
ENST00000375076
36
ENSE00001713440
chr6:
32150978-32150891
88
RAGE_HUMAN
141-170
30
1
A:141-170
30
1.37c
ENST00000375076
37c
ENSE00002190296
chr6:
32150800-32150618
183
RAGE_HUMAN
170-231
62
1
A:170-231
62
1.37e
ENST00000375076
37e
ENSE00001645542
chr6:
32150475-32150345
131
RAGE_HUMAN
231-274
44
1
A:231-240
10
1.38a
ENST00000375076
38a
ENSE00001799555
chr6:
32150165-32150024
142
RAGE_HUMAN
275-322
48
0
-
-
1.39b
ENST00000375076
39b
ENSE00001770630
chr6:
32149409-32149383
27
RAGE_HUMAN
322-331
10
0
-
-
1.39e
ENST00000375076
39e
ENSE00001675079
chr6:
32149254-32149128
127
RAGE_HUMAN
331-373
43
0
-
-
1.40b
ENST00000375076
40b
ENSE00001903924
chr6:
32149016-32148745
272
RAGE_HUMAN
373-404
32
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (46 KB)
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