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3CIY
Asym. Unit
Info
Asym.Unit (273 KB)
Biol.Unit 1 (262 KB)
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(1)
Title
:
MOUSE TOLL-LIKE RECEPTOR 3 ECTODOMAIN COMPLEXED WITH DOUBLE-STRANDED RNA
Authors
:
L. Liu, I. Botos, Y. Wang, J. N. Leonard, J. Shiloach, D. M. Segal, D. R. Da
Date
:
12 Mar 08 (Deposition) - 06 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.41
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Leucine Rich Repeat, Lrr, Protein-Dsrna Complex, Innate Immunity, Tlr, Dsrna, Glycoprotein, Immune Response, Inflammatory Response, Leucine-Rich Repeat, Membrane, Receptor, Transmembrane, Immune System-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Liu, I. Botos, Y. Wang, J. N. Leonard, J. Shiloach, D. M. Segal, D. R. Davies
Structural Basis Of Toll-Like Receptor 3 Signaling With Double-Stranded Rna.
Science V. 320 379 2008
[
close entry info
]
Hetero Components
(6, 44)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-L-FUCOSE (FULa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
6c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
6d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
6e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
6f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
6g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
6h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
6i: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGi)
6j: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGj)
6k: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGk)
6l: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGl)
6m: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGm)
6n: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
1
Ligand/Ion
BETA-L-FUCOSE
4
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
14
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: AD3 (SOFTWARE)
12: AD4 (SOFTWARE)
13: AD5 (SOFTWARE)
14: AD6 (SOFTWARE)
15: AD7 (SOFTWARE)
16: AD8 (SOFTWARE)
17: AD9 (SOFTWARE)
18: AE1 (SOFTWARE)
19: AE2 (SOFTWARE)
20: BC4 (SOFTWARE)
21: BC6 (SOFTWARE)
22: BC7 (SOFTWARE)
23: BC8 (SOFTWARE)
24: BC9 (SOFTWARE)
25: CC1 (SOFTWARE)
26: CC2 (SOFTWARE)
27: CC4 (SOFTWARE)
28: CC6 (SOFTWARE)
29: CC7 (SOFTWARE)
30: CC8 (SOFTWARE)
31: CC9 (SOFTWARE)
32: DC4 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:44 , ILE A:45 , PRO A:67 , ASN A:70
BINDING SITE FOR RESIDUE NDG A 724
02
AC2
SOFTWARE
GLU A:171 , ASN A:196
BINDING SITE FOR RESIDUE NAG A 1961
03
AC3
SOFTWARE
ARG A:200 , GLN A:251 , ASN A:252 , THR A:277 , GLN A:278 , NDG A:2522
BINDING SITE FOR RESIDUE NAG A 2521
04
AC4
SOFTWARE
TYR A:302 , NAG A:2521
BINDING SITE FOR RESIDUE NDG A 2522
05
AC5
SOFTWARE
ASN A:275 , NAG A:2752
BINDING SITE FOR RESIDUE NAG A 2751
06
AC7
SOFTWARE
NAG A:2751 , MAN A:2753
BINDING SITE FOR RESIDUE NAG A 2752
07
AC8
SOFTWARE
NAG A:2752
BINDING SITE FOR RESIDUE MAN A 2753
08
AC9
SOFTWARE
ASN A:291 , NAG A:2912 , FUC A:2916
BINDING SITE FOR RESIDUE NAG A 2911
09
AD1
SOFTWARE
NAG A:2911
BINDING SITE FOR RESIDUE NAG A 2912
10
AD2
SOFTWARE
NAG A:2911 , GLN B:394
BINDING SITE FOR RESIDUE FUC A 2916
11
AD3
SOFTWARE
ASN A:398 , NDG A:3982
BINDING SITE FOR RESIDUE NAG A 3981
12
AD4
SOFTWARE
NAG A:3981
BINDING SITE FOR RESIDUE NDG A 3982
13
AD5
SOFTWARE
NDG A:4131 , MAN A:4133
BINDING SITE FOR RESIDUE NAG A 4132
14
AD6
SOFTWARE
SER A:481 , ASN A:507 , NAG A:5072
BINDING SITE FOR RESIDUE NDG A 5071
15
AD7
SOFTWARE
HIS B:44 , ILE B:45 , PRO B:67 , ASN B:70
BINDING SITE FOR RESIDUE NAG B 724
16
AD8
SOFTWARE
NAG B:2751 , BMA B:2753
BINDING SITE FOR RESIDUE NAG B 2752
17
AD9
SOFTWARE
NAG B:2752
BINDING SITE FOR RESIDUE BMA B 2753
18
AE1
SOFTWARE
ASN B:291 , ARG B:312 , SER B:314 , NAG B:2912 , FUL B:2916
BINDING SITE FOR RESIDUE NAG B 2911
19
AE2
SOFTWARE
PRO B:315 , NAG B:2911 , NAG B:2912
BINDING SITE FOR RESIDUE FUL B 2916
20
BC4
SOFTWARE
ASN A:413 , ASP A:437 , NAG A:4132
BINDING SITE FOR RESIDUE NDG A 4131
21
BC6
SOFTWARE
NAG A:4132 , MAN A:4134 , MAN A:4135
BINDING SITE FOR RESIDUE MAN A 4133
22
BC7
SOFTWARE
MAN A:4133
BINDING SITE FOR RESIDUE MAN A 4134
23
BC8
SOFTWARE
MAN A:4133 , U C:15 , U C:16
BINDING SITE FOR RESIDUE MAN A 4135
24
BC9
SOFTWARE
ASN A:424 , GLN A:450 , NDG A:4242
BINDING SITE FOR RESIDUE NDG A 4241
25
CC1
SOFTWARE
NDG A:4241 , BMA A:4243
BINDING SITE FOR RESIDUE NDG A 4242
26
CC2
SOFTWARE
NDG A:4242
BINDING SITE FOR RESIDUE BMA A 4243
27
CC4
SOFTWARE
NDG A:5071
BINDING SITE FOR RESIDUE NAG A 5072
28
CC6
SOFTWARE
ASN B:196
BINDING SITE FOR RESIDUE NAG B 1961
29
CC7
SOFTWARE
GLN B:251 , ASN B:252 , GLN B:278 , NDG B:2522
BINDING SITE FOR RESIDUE NAG B 2521
30
CC8
SOFTWARE
TYR B:302 , NAG B:2521
BINDING SITE FOR RESIDUE NDG B 2522
31
CC9
SOFTWARE
TRP B:273 , ASN B:275 , NAG B:2752
BINDING SITE FOR RESIDUE NAG B 2751
32
DC4
SOFTWARE
NAG B:2911 , FUL B:2916
BINDING SITE FOR RESIDUE NAG B 2912
33
DC6
SOFTWARE
ASN B:398 , GLU B:399 , NDG B:3982
BINDING SITE FOR RESIDUE NAG B 3981
34
DC7
SOFTWARE
TRP A:243 , NAG B:3981
BINDING SITE FOR RESIDUE NDG B 3982
35
DC8
SOFTWARE
SER B:387 , ASN B:413 , ASP B:437 , NDG B:4132
BINDING SITE FOR RESIDUE NDG B 4131
36
DC9
SOFTWARE
NDG B:4131 , MAN B:4133
BINDING SITE FOR RESIDUE NDG B 4132
37
EC1
SOFTWARE
NDG B:4132 , MAN B:4134 , MAN B:4135
BINDING SITE FOR RESIDUE MAN B 4133
38
EC2
SOFTWARE
MAN B:4133
BINDING SITE FOR RESIDUE MAN B 4134
39
EC3
SOFTWARE
MAN B:4133 , A D:17
BINDING SITE FOR RESIDUE MAN B 4135
40
EC4
SOFTWARE
ASN B:424 , GLN B:450 , NDG B:4242
BINDING SITE FOR RESIDUE NDG B 4241
41
EC5
SOFTWARE
NDG B:4241 , BMA B:4243
BINDING SITE FOR RESIDUE NDG B 4242
42
EC6
SOFTWARE
NDG B:4242
BINDING SITE FOR RESIDUE BMA B 4243
43
EC7
SOFTWARE
PRO B:480 , ASN B:507 , NAG B:5072
BINDING SITE FOR RESIDUE NDG B 5071
44
EC8
SOFTWARE
NDG B:5071
BINDING SITE FOR RESIDUE NAG B 5072
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 36)
Info
All PROSITE Patterns/Profiles
1: LRR (A:52-73,B:52-73|A:76-97,B:76-97|A:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
TLR3_MOUSE
53-74
77-98
101-122
125-146
149-170
173-196
199-220
276-297
250-271
300-321
357-378
409-430
433-454
508-529
532-553
564-585
588-609
612-633
36
A:52-73
B:52-73
A:76-97
B:76-97
A:100-121
B:100-121
A:124-145
B:124-145
A:148-169
B:148-169
A:172-195
B:172-195
A:198-219
B:198-219
A:275-296
B:275-296
A:249-270
B:249-270
A:299-320
B:299-320
A:356-377
B:356-377
A:408-429
B:408-429
A:432-453
B:432-453
A:507-528
B:507-528
A:531-552
B:531-552
A:563-584
B:563-584
A:587-608
B:587-608
A:611-632
B:611-632
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
close Pfam info
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Atom Selection
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)
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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