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Asym. Unit
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Asym.Unit (145 KB)
Biol.Unit 1 (139 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE HYDE FROM THERMOTOGA MARITIMA
Authors
:
Y. Nicolet, J. K. Ruback, M. C. Posewitz, P. Amara, C. Mathevon, M. Atta, M. Fontecave, J. C. Fontecilla-Camps
Date
:
12 Mar 08 (Deposition) - 08 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Radical Adomet Protein, Fefe-Hydrogenase Maturation, Beta Barrel, Fe4S4 Cluster, Adomet Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nicolet, J. K. Rubach, M. C. Posewitz, P. Amara, C. Mathevon, M. Atta, M. Fontecave, J. C. Fontecilla-Camps
X-Ray Structure Of The [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima
J. Biol. Chem. V. 283 18861 2008
(for further references see the
PDB file header
)
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Hetero Components
(7, 14)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
2b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
2c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
2d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
2e: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSe)
3a: S-HYDROXYCYSTEINE (CSOa)
3b: S-HYDROXYCYSTEINE (CSOb)
4a: 2-AMINO-3-(4-HYDROXY-6-OXOCYCLOHEX... (OTYa)
5a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
6a: SULFOACETIC ACID (SATa)
7a: IRON/SULFUR CLUSTER (SF4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
CPS
5
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
4
OTY
1
Mod. Amino Acid
2-AMINO-3-(4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIENYL)PROPANOIC ACID
5
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
6
SAT
1
Ligand/Ion
SULFOACETIC ACID
7
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:159 , THR A:268 , THR A:269 , ALA A:270 , TYR A:306 , HOH A:2811 , HOH A:2812
BINDING SITE FOR RESIDUE CL A 349
02
AC2
SOFTWARE
ARG A:54 , THR A:134 , ARG A:155
BINDING SITE FOR RESIDUE CL A 350
03
AC3
SOFTWARE
ARG A:159 , PRO A:266 , MET A:291 , HOH A:2603
BINDING SITE FOR RESIDUE CL A 351
04
AC4
SOFTWARE
CYS A:63 , CYS A:67 , CYS A:70 , GLY A:109
BINDING SITE FOR RESIDUE SF4 A 2460
05
AC5
SOFTWARE
TYR A:69 , SER A:108 , SER A:136 , ARG A:159 , GLU A:161 , ARG A:180 , MET A:199 , PRO A:229 , ILE A:231 , TYR A:303 , LEU A:305 , HOH A:2471 , HOH A:2477 , HOH A:2479 , HOH A:2488 , HOH A:2527 , HOH A:2794
BINDING SITE FOR RESIDUE SAH A 1501
06
AC6
SOFTWARE
GLN A:98 , PHE A:99 , GLY A:100 , PRO A:276 , GLY A:277 , GLU A:280 , ARG A:284 , MET A:324 , LEU A:330 , HOH A:2468 , HOH A:2504 , HOH A:2554 , HOH A:2565 , HOH A:2685 , HOH A:2753 , HOH A:2773 , HOH A:2820
BINDING SITE FOR RESIDUE CPS A 1701
07
AC7
SOFTWARE
LYS A:170 , SER A:297 , ASP A:316 , HOH A:2781
BINDING SITE FOR RESIDUE SAT A 1706
08
AC8
SOFTWARE
LYS A:37 , ASP A:40 , ARG A:284 , THR A:317 , HOH A:2558 , HOH A:2607 , HOH A:2634 , HOH A:2653 , HOH A:2659 , HOH A:2781
BINDING SITE FOR RESIDUE CPS A 1702
09
AC9
SOFTWARE
ARG A:29 , GLU A:33 , PHE A:246 , THR A:247 , LEU A:250 , HOH A:2553 , HOH A:2557 , HOH A:2563 , HOH A:2758 , HOH A:2775 , HOH A:2824
BINDING SITE FOR RESIDUE CPS A 1703
10
BC1
SOFTWARE
ARG A:29 , THR A:317 , ALA A:318 , HOH A:2563 , HOH A:2591 , HOH A:2688 , HOH A:2821 , HOH A:2835
BINDING SITE FOR RESIDUE CPS A 1704
11
BC2
SOFTWARE
LYS A:128 , MET A:324 , LYS A:325 , GLU A:328 , HOH A:2667 , HOH A:2703 , HOH A:2741 , HOH A:2742 , HOH A:2773
BINDING SITE FOR RESIDUE CPS A 1705
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (145 KB)
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