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3CII
Asym. Unit
Info
Asym.Unit (201 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
STRUCTURE OF NKG2A/CD94 BOUND TO HLA-E
Authors
:
R. K. Strong, B. K. Kaiser, J. C. Pizarro
Date
:
11 Mar 08 (Deposition) - 13 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.41
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,G,H (1x)
Biol. Unit 2: D,E,F,I,J (1x)
Keywords
:
C-Type Lectin-Like, Glycoprotein, Immune Response, Membrane, Mhc I, Transmembrane, Disease Mutation, Glycation, Immunoglobulin Domain, Pyrrolidone Carboxylic Acid, Secreted, Lectin, Receptor, Signal- Anchor, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. K. Kaiser, J. C. Pizarro, J. Kerns, R. K. Strong
Structural Basis For Nkg2A/Cd94 Recognition Of Hla-E.
Proc. Natl. Acad. Sci. Usa V. 105 6696 2008
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059510 (N77K, chain A/D, )
2: VAR_004395 (G83R, chain A/D, )
3: VAR_016651 (R107G, chain A/D, )
4: VAR_016652 (R157G, chain A/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059510
N
98
K
HLAE_HUMAN
Polymorphism
1059510
A/D
N
77
K
2
UniProt
VAR_004395
G
104
R
HLAE_HUMAN
Polymorphism
---
A/D
G
83
R
3
UniProt
VAR_016651
R
128
G
HLAE_HUMAN
Polymorphism
1264457
A/D
R
107
G
4
UniProt
VAR_016652
R
178
G
HLAE_HUMAN
Polymorphism
41562314
A/D
R
157
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (G:68-175,I:68-175,H:126-230,J:126-...)
2: IG_MHC (B:78-84,E:78-84,A:257-263,D:257-26...)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
KLRD1_HUMAN
68-175
2
G:68-175
I:68-175
NKG2A_HUMAN
126-230
2
H:126-230
J:126-230
2
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
2
B:78-84
E:78-84
HLAE_HUMAN
278-284
2
A:257-263
D:257-263
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Exons
(11, 22)
Info
All Exons
Exon 1.4 (H:113-113 | J:113-113)
Exon 1.6 (H:113-163 | J:113-163)
Exon 1.7 (H:164-197 | J:164-197)
Exon 1.8 (H:197-232 (gaps) | J:197-232 (gaps...)
Exon 2.4 (G:59-105 | I:59-105)
Exon 2.5b (G:106-141 | I:106-141)
Exon 2.6 (G:141-179 | I:141-179)
Exon 3.1d (A:2-91 | D:2-91)
Exon 3.1p (A:91-183 | D:91-183)
Exon 3.1x (A:183-274 | D:183-274)
Exon 4.10q (C:1-9 | F:1-9)
View:
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/-
06: Boundary 2.3/2.4
07: Boundary 2.4/2.5b
08: Boundary 2.5b/2.6
09: Boundary 2.6/-
10: Boundary 3.1a/3.1d
11: Boundary 3.1d/3.1p
12: Boundary 3.1p/3.1x
13: Boundary 3.1x/3.1ad
14: Boundary -/4.10q
15: Boundary 4.10q/4.10x
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000359151
1
ENSE00000993571
chr12:
10605947-10605797
151
NKG2A_HUMAN
-
0
0
-
-
1.2
ENST00000359151
2
ENSE00001337677
chr12:
10603786-10603569
218
NKG2A_HUMAN
1-63
63
0
-
-
1.3
ENST00000359151
3
ENSE00000915517
chr12:
10603178-10603083
96
NKG2A_HUMAN
63-95
33
0
-
-
1.4
ENST00000359151
4
ENSE00000915516
chr12:
10602566-10602513
54
NKG2A_HUMAN
95-113
19
2
H:113-113
J:113-113
1
1
1.6
ENST00000359151
6
ENSE00001657718
chr12:
10601987-10601836
152
NKG2A_HUMAN
113-163
51
2
H:113-163
J:113-163
51
51
1.7
ENST00000359151
7
ENSE00001633944
chr12:
10600231-10600131
101
NKG2A_HUMAN
164-197
34
2
H:164-197
J:164-197
34
34
1.8
ENST00000359151
8
ENSE00001490174
chr12:
10599261-10598642
620
NKG2A_HUMAN
197-233
37
2
H:197-232 (gaps)
J:197-232 (gaps)
36
36
2.1a
ENST00000381908
1a
ENSE00001430082
chr12:
10460417-10460683
267
KLRD1_HUMAN
1-3
3
0
-
-
2.2
ENST00000381908
2
ENSE00001277093
chr12:
10461987-10462079
93
KLRD1_HUMAN
3-34
32
0
-
-
2.3
ENST00000381908
3
ENSE00001209269
chr12:
10462225-10462287
63
KLRD1_HUMAN
34-55
22
0
-
-
2.4
ENST00000381908
4
ENSE00000915504
chr12:
10464063-10464214
152
KLRD1_HUMAN
55-105
51
2
G:59-105
I:59-105
47
47
2.5b
ENST00000381908
5b
ENSE00001277136
chr12:
10466006-10466112
107
KLRD1_HUMAN
106-141
36
2
G:106-141
I:106-141
36
36
2.6
ENST00000381908
6
ENSE00001525025
chr12:
10467272-10469850
2579
KLRD1_HUMAN
141-180
40
2
G:141-179
I:141-179
39
39
3.1a
ENST00000383597
1a
ENSE00001870885
HSCHR6_MHC_QBL:30446762-30446890
129
HLAE_HUMAN
1-22
22
0
-
-
3.1d
ENST00000383597
1d
ENSE00001611849
HSCHR6_MHC_QBL:30447021-30447290
270
HLAE_HUMAN
22-112
91
2
A:2-91
D:2-91
90
90
3.1p
ENST00000383597
1p
ENSE00001745192
HSCHR6_MHC_QBL:30447535-30447810
276
HLAE_HUMAN
112-204
93
2
A:91-183
D:91-183
93
93
3.1x
ENST00000383597
1x
ENSE00001623966
HSCHR6_MHC_QBL:30448432-30448707
276
HLAE_HUMAN
204-296
93
2
A:183-274
D:183-274
92
92
3.1ad
ENST00000383597
1ad
ENSE00001618059
HSCHR6_MHC_QBL:30448832-30448948
117
HLAE_HUMAN
296-335
40
0
-
-
3.1an
ENST00000383597
1an
ENSE00001758462
HSCHR6_MHC_QBL:30449699-30449731
33
HLAE_HUMAN
335-346
12
0
-
-
3.2
ENST00000383597
2
ENSE00001707049
HSCHR6_MHC_QBL:30449836-30449878
43
HLAE_HUMAN
346-358
13
0
-
-
3.3b
ENST00000383597
3b
ENSE00001598949
HSCHR6_MHC_QBL:30450044-30451500
1457
HLAE_HUMAN
-
0
0
-
-
4.10q
ENST00000383621
10q
ENSE00001879878
HSCHR6_MHC_QBL:29792786-29792882
97
HLAG_HUMAN
1-25
25
2
C:1-9
F:1-9
9
9
4.10x
ENST00000383621
10x
ENSE00001604643
HSCHR6_MHC_QBL:29793012-29793281
270
HLAG_HUMAN
25-115
91
0
-
-
4.10ac
ENST00000383621
10ac
ENSE00001699371
HSCHR6_MHC_QBL:29793508-29793783
276
HLAG_HUMAN
115-207
93
0
-
-
4.11h
ENST00000383621
11h
ENSE00001683952
HSCHR6_MHC_QBL:29794383-29794658
276
HLAG_HUMAN
207-299
93
0
-
-
4.11p
ENST00000383621
11p
ENSE00001612508
HSCHR6_MHC_QBL:29794781-29794897
117
HLAG_HUMAN
299-338
40
0
-
-
4.14e
ENST00000383621
14e
ENSE00001622793
HSCHR6_MHC_QBL:29795343-29795375
33
HLAG_HUMAN
338-338
1
0
-
-
4.14q
ENST00000383621
14q
ENSE00001497869
HSCHR6_MHC_QBL:29795733-29796106
374
HLAG_HUMAN
-
0
0
-
-
[
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SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d3ciib1 (B:0-99)
1b: SCOP_d3ciie1 (E:0-99)
2a: SCOP_d3ciia1 (A:182-274)
2b: SCOP_d3ciid1 (D:182-274)
3a: SCOP_d3ciig1 (G:59-179)
3b: SCOP_d3ciii1 (I:59-179)
4a: SCOP_d3ciia2 (A:2-181)
4b: SCOP_d3ciid2 (D:2-181)
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Classes
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(
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Folds
(
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(
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(
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d3ciib1
B:0-99
1b
d3ciie1
E:0-99
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d3ciia1
A:182-274
2b
d3ciid1
D:182-274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
CD94
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d3ciig1
G:59-179
3b
d3ciii1
I:59-179
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-E [TaxId: 9606]
(8)
4a
d3ciia2
A:2-181
4b
d3ciid2
D:2-181
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (201 KB)
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