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3CIG
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (118 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE TLR3 ECTODOMAIN
Authors
:
L. Liu, I. Botos, Y. Wang, J. N. Leonard, J. Shiloach, D. M. Segal, D. R. Da
Date
:
11 Mar 08 (Deposition) - 06 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.66
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Leucine-Rich Repeat, Innate Immunity, Tlr, Lrr, Glycoprotein, Immune Response, Inflammatory Response, Membrane, Receptor, Transmembrane, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Liu, I. Botos, Y. Wang, J. N. Leonard, J. Shiloach, D. M. Segal, D. R. Davies
Structural Basis Of Toll-Like Receptor 3 Signaling With Double-Stranded Rna.
Science V. 320 379 2008
[
close entry info
]
Hetero Components
(6, 25)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-L-FUCOSE (FULa)
3b: BETA-L-FUCOSE (FULb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
6c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
6d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
6e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
6f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
6g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
6h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
2
Ligand/Ion
BETA-L-FUCOSE
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
8
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: AD3 (SOFTWARE)
12: BC1 (SOFTWARE)
13: BC2 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:44 , ILE A:45 , ASN A:70
BINDING SITE FOR RESIDUE NAG A 724
02
AC2
SOFTWARE
VAL A:168 , GLU A:171 , ASN A:196
BINDING SITE FOR RESIDUE NAG A 1961
03
AC3
SOFTWARE
ARG A:200 , ASN A:252 , GLN A:278 , NDG A:2522
BINDING SITE FOR RESIDUE NAG A 2521
04
AC4
SOFTWARE
NAG A:2521 , HOH A:6730
BINDING SITE FOR RESIDUE NDG A 2522
05
AC5
SOFTWARE
ASN A:247 , TRP A:273 , ASN A:275 , GLU A:602 , NAG A:2752 , FUL A:2756
BINDING SITE FOR RESIDUE NAG A 2751
06
AC6
SOFTWARE
GLU A:576 , NAG A:2751 , FUL A:2756
BINDING SITE FOR RESIDUE NAG A 2752
07
AC8
SOFTWARE
NAG A:2751 , NAG A:2752
BINDING SITE FOR RESIDUE FUL A 2756
08
AC9
SOFTWARE
ASN A:291 , NAG A:2912 , FUC A:2916
BINDING SITE FOR RESIDUE NAG A 2911
09
AD1
SOFTWARE
NAG A:2911
BINDING SITE FOR RESIDUE NAG A 2912
10
AD2
SOFTWARE
NAG A:3981
BINDING SITE FOR RESIDUE NDG A 3982
11
AD3
SOFTWARE
SER A:387 , ASN A:413 , THR A:415 , ASP A:437 , NDG A:4132
BINDING SITE FOR RESIDUE NDG A 4131
12
BC1
SOFTWARE
ARG A:316 , NAG A:2911
BINDING SITE FOR RESIDUE FUC A 2916
13
BC2
SOFTWARE
ASN A:398 , GLU A:399 , NDG A:3982
BINDING SITE FOR RESIDUE NAG A 3981
14
BC5
SOFTWARE
NDG A:4131 , MAN A:4133
BINDING SITE FOR RESIDUE NDG A 4132
15
BC6
SOFTWARE
NDG A:4132 , BMA A:4134 , MAN A:4135
BINDING SITE FOR RESIDUE MAN A 4133
16
BC7
SOFTWARE
MAN A:4133
BINDING SITE FOR RESIDUE BMA A 4134
17
BC8
SOFTWARE
MAN A:4133
BINDING SITE FOR RESIDUE MAN A 4135
18
BC9
SOFTWARE
ASN A:424 , SER A:448 , GLN A:450 , NDG A:4242 , FUL A:4246
BINDING SITE FOR RESIDUE NDG A 4241
19
CC1
SOFTWARE
NDG A:4241 , BMA A:4243 , HOH A:6693
BINDING SITE FOR RESIDUE NDG A 4242
20
CC2
SOFTWARE
NDG A:4242
BINDING SITE FOR RESIDUE BMA A 4243
21
CC3
SOFTWARE
GLN A:450 , NDG A:4241
BINDING SITE FOR RESIDUE FUL A 4246
22
CC4
SOFTWARE
SER A:481 , ASN A:507 , NAG A:5072
BINDING SITE FOR RESIDUE NDG A 5071
23
CC5
SOFTWARE
NDG A:5071
BINDING SITE FOR RESIDUE NAG A 5072
24
CC6
SOFTWARE
ASN A:659 , ASN A:662 , THR A:693 , HOH A:6746
BINDING SITE FOR RESIDUE NDG A 6621
25
CC7
SOFTWARE
ASN A:638 , HIS A:665 , ASN A:667
BINDING SITE FOR RESIDUE NAG A 6671
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: LRR (A:52-73|A:76-97|A:100-121|A:124-14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
TLR3_MOUSE
53-74
77-98
101-122
125-146
149-170
173-196
199-220
276-297
250-271
300-321
357-378
409-430
433-454
508-529
532-553
564-585
588-609
612-633
18
A:52-73
A:76-97
A:100-121
A:124-145
A:148-169
A:172-195
A:198-219
A:275-296
A:249-270
A:299-320
A:356-377
A:408-429
A:432-453
A:507-528
A:531-546
A:563-584
A:587-608
A:611-632
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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by Chain (Asym. Unit)
by Chain (Biol. Unit)
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (126 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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