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3CFP
Asym. Unit
Info
Asym.Unit (177 KB)
Biol.Unit 1 (169 KB)
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(1)
Title
:
STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA POLYMERASE, TERNARY COMPLEX 1
Authors
:
J. Wang, D. Klimenko, M. Wang, T. A. Steitz, W. H. Konigsberg
Date
:
04 Mar 08 (Deposition) - 10 Mar 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,P,T
Biol. Unit 1: A,P,T (1x)
Keywords
:
Dna Polymerase, Catalytic Complex, Fidelity, Two Metal Ion Mechanism, Dna Replication, Dna-Binding, Dna-Directed Dna Polymerase, Exonuclease, Hydrolase, Nuclease, Nucleotidyltransferase, Transferase, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Klimenko, M. Wang, T. A. Steitz, W. H. Konigsberg, J. Wang
Insights Into Base Selectivity From The Structures Of An Rb69 Dna Polymerase Triple Mutant
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
3a: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCa)
4a: THYMIDINE-5'-TRIPHOSPHATE (TTPa)
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No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
DOC
1
Mod. Nucleotide
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
4
TTP
1
Ligand/Ion
THYMIDINE-5'-TRIPHOSPHATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:411 , LEU A:412 , ASP A:623
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
ASP A:411 , ASP A:623
BINDING SITE FOR RESIDUE CA A 1002
3
AC3
SOFTWARE
ASP A:684 , GLU A:686 , GLU A:716
BINDING SITE FOR RESIDUE CA A 1003
4
AC4
SOFTWARE
GLU A:116
BINDING SITE FOR RESIDUE CA A 1004
5
AC5
SOFTWARE
ASN A:228 , LYS A:231 , ASN A:232
BINDING SITE FOR RESIDUE CL A 1005
6
AC6
SOFTWARE
ASP A:411 , LEU A:412 , SER A:414 , LEU A:415 , TYR A:416 , ARG A:482 , LYS A:560 , ASN A:564 , ASP A:623 , DA T:3 , DG T:4
BINDING SITE FOR RESIDUE TTP A 1006
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DNA_POLYMERASE_B (A:619-627)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_POLYMERASE_B
PS00116
DNA polymerase family B signature.
DPOL_BPR69
619-627
1
A:619-627
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Exons
(0, 0)
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Asymmetric Unit 1
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