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3CFI
Asym. Unit
Info
Asym.Unit (237 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (57 KB)
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(1)
Title
:
NANOBODY-AIDED STRUCTURE DETERMINATION OF THE EPSI:EPSJ PSEUDOPILIN HETERDIMER FROM VIBRIO VULNIFICUS
Authors
:
A. Y. Lam, E. Pardon, K. V. Korotkov, J. Steyaert, W. G. J. Hol
Date
:
03 Mar 08 (Deposition) - 13 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.58
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
General Secretory Pathway, Pseudopilins, Single Chain Antibody, Methylation, Protein Transport-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Y. Lam, E. Pardon, K. V. Korotkov, W. G. Hol, J. Steyaert
Nanobody-Aided Structure Determination Of The Epsi:Epsj Pseudopilin Heterodimer From Vibrio Vulnificus.
J. Struct. Biol. V. 166 8 2009
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
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No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP K:96 , HIS K:97
BINDING SITE FOR RESIDUE CL K 1
2
AC2
SOFTWARE
TRP E:96
BINDING SITE FOR RESIDUE CL E 1
3
AC3
SOFTWARE
TRP B:96 , HIS B:97
BINDING SITE FOR RESIDUE CL B 1
4
AC4
SOFTWARE
ARG H:93 , TRP H:96 , HIS H:97
BINDING SITE FOR RESIDUE CL H 1
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3cfic_ (C:)
1b: SCOP_d3cfif_ (F:)
1c: SCOP_d3cfii_ (I:)
1d: SCOP_d3cfil_ (L:)
2a: SCOP_d3cfib_ (B:)
2b: SCOP_d3cfie_ (E:)
2c: SCOP_d3cfih_ (H:)
2d: SCOP_d3cfik_ (K:)
3a: SCOP_d3cfia_ (A:)
3b: SCOP_d3cfid_ (D:)
3c: SCOP_d3cfig_ (G:)
3d: SCOP_d3cfij_ (J:)
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)
Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Llama (Lama glama) [TaxId: 9844]
(62)
1a
d3cfic_
C:
1b
d3cfif_
F:
1c
d3cfii_
I:
1d
d3cfil_
L:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Pili subunits
(34)
Superfamily
:
Pili subunits
(34)
Family
:
EpsJ-like
(3)
Protein domain
:
Type II secretory pathway component EpsJ
(2)
Vibrio vulnificus [TaxId: 672]
(2)
2a
d3cfib_
B:
2b
d3cfie_
E:
2c
d3cfih_
H:
2d
d3cfik_
K:
Family
:
GSPII I/J protein-like
(3)
Protein domain
:
Pseudopilin EpsI
(2)
Vibrio vulnificus [TaxId: 672]
(2)
3a
d3cfia_
A:
3b
d3cfid_
D:
3c
d3cfig_
G:
3d
d3cfij_
J:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3cfiL00 (L:3-113)
1b: CATH_3cfiF00 (F:2-115)
1c: CATH_3cfiC00 (C:2-116)
1d: CATH_3cfiI00 (I:1-116)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Vibrio vulnificus. Organism_taxid: 672.
(1)
1a
3cfiL00
L:3-113
1b
3cfiF00
F:2-115
1c
3cfiC00
C:2-116
1d
3cfiI00
I:1-116
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Pfam Domains
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Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (237 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
Header - Biol.Unit 2
Biol.Unit 3 (58 KB)
Header - Biol.Unit 3
Biol.Unit 4 (57 KB)
Header - Biol.Unit 4
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