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3CFE
Biol. Unit 1
Info
Asym.Unit (142 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PURPLE-FLUORESCENT ANTIBODY EP2-25C10
Authors
:
E. W. Debler, A. Heine, I. A. Wilson
Date
:
03 Mar 08 (Deposition) - 18 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.99
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: H,L (1x)
Keywords
:
Immunoglobulin, Purple-Fluorescent Antibody, Hapten Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. W. Debler, G. F. Kaufmann, M. M. Meijler, A. Heine, J. M. Mee, G. Pljevaljcic, A. J. Di Bilio, P. G. Schultz, D. P. Millar, K. D. Janda I. A. Wilson, H. B. Gray, R. A. Lerner
Deeply Inverted Electron-Hole Recombination In A Luminescen Antibody-Stilbene Complex.
Science V. 319 1232 2008
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:24 , GLY A:152 , SER A:153 , GLU A:154
BINDING SITE FOR RESIDUE SO4 A 301
2
AC4
SOFTWARE
TYR A:49 , HIS A:55 , SER A:56 , ARG B:100B
BINDING SITE FOR RESIDUE SO4 A 304
3
AC5
SOFTWARE
ASP A:151 , HIS A:189 , ARG B:71
BINDING SITE FOR RESIDUE SO4 B 305
4
AC8
SOFTWARE
SER A:65 , GLY A:66 , LYS B:64
BINDING SITE FOR RESIDUE GOL A 403
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:192-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
1
A:192-198
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3cfea1 (A:1-107)
1b: SCOP_d3cfel1 (L:1-107)
2a: SCOP_d3cfea2 (A:108-213)
2b: SCOP_d3cfel2 (L:108-213)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d3cfea1
A:1-107
1b
d3cfel1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d3cfea2
A:108-213
2b
d3cfel2
L:108-213
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3cfeA02 (A:108-211)
1b: CATH_3cfeB02 (B:114-227)
1c: CATH_3cfeH02 (H:114-227)
1d: CATH_3cfeB01 (B:1-113)
1e: CATH_3cfeH01 (H:1-113)
1f: CATH_3cfeL02 (L:108-211)
1g: CATH_3cfeA01 (A:1-107)
1h: CATH_3cfeL01 (L:1-107)
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)
(
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
3cfeA02
A:108-211
1b
3cfeB02
B:114-227
1c
3cfeH02
H:114-227
1d
3cfeB01
B:1-113
1e
3cfeH01
H:1-113
1f
3cfeL02
L:108-211
1g
3cfeA01
A:1-107
1h
3cfeL01
L:1-107
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (142 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
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