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3CFB
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
HIGH-RESOLUTION STRUCTURE OF BLUE FLUORESCENT ANTIBODY EP2-19G2 IN COMPLEX WITH STILBENE HAPTEN AT 100K
Authors
:
E. W. Debler, I. A. Wilson
Date
:
03 Mar 08 (Deposition) - 18 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: H,L (1x)
Keywords
:
Immunoglobulin, Blue-Fluorescent Antibody, Hapten Complex, Immune System, Electron Transfer
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. W. Debler, G. F. Kaufmann, M. M. Meijler, A. Heine, J. M. Mee, G. Pljevaljcic, A. J. Di Bilio, P. G. Schultz, D. P. Millar, K. D. Janda I. A. Wilson, H. B. Gray, R. A. Lerner
Deeply Inverted Electron-Hole Recombination In A Luminescen Antibody-Stilbene Complex.
Science V. 319 1232 2008
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: 4-(4-STYRYL-PHENYLCARBAMOYL)-BUTYR... (SPBa)
2b: 4-(4-STYRYL-PHENYLCARBAMOYL)-BUTYR... (SPBb)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
SPB
2
Ligand/Ion
4-(4-STYRYL-PHENYLCARBAMOYL)-BUTYRIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER H:35 , LEU H:45 , ALA H:93 , GLY H:95 , GLN H:96 , TRP H:103 , TYR L:34 , LEU L:92 , PRO L:96
BINDING SITE FOR RESIDUE SPB L 301
2
AC2
SOFTWARE
TYR A:34 , LEU A:92 , LEU A:94 , PRO A:96 , ILE B:33 , SER B:35 , LEU B:45 , ALA B:93 , GLN B:96 , TRP B:103
BINDING SITE FOR RESIDUE SPB B 302
3
AC3
SOFTWARE
HIS L:27D , LEU L:92
BINDING SITE FOR RESIDUE GOL L 402
4
AC4
SOFTWARE
SER A:10 , SER A:20 , ILE A:21 , SER A:22 , GLY L:66
BINDING SITE FOR RESIDUE GOL L 406
5
AC5
SOFTWARE
SER A:56 , GLY A:57 , TYR H:102
BINDING SITE FOR RESIDUE GOL H 405
6
AC6
SOFTWARE
LYS A:39 , GLN A:45 , GLY A:57 , PRO A:59 , GLU A:81 , ASP A:82
BINDING SITE FOR RESIDUE GOL A 401
7
AC7
SOFTWARE
ASP A:1 , LYS A:27 , GLU A:93 , SER H:53 , GLY H:54 , ASN H:73
BINDING SITE FOR RESIDUE GOL A 403
8
AC8
SOFTWARE
HIS A:27D , ASN A:28 , TYR A:32 , LEU A:92
BINDING SITE FOR RESIDUE GOL A 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:192-198,L:192-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
A:192-198
L:192-198
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3cfba1 (A:1-107)
1b: SCOP_d3cfbl1 (L:1-107)
2a: SCOP_d3cfba2 (A:108-213)
2b: SCOP_d3cfbl2 (L:108-213)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d3cfba1
A:1-107
1b
d3cfbl1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d3cfba2
A:108-213
2b
d3cfbl2
L:108-213
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3cfbA02 (A:109-211)
1b: CATH_3cfbB02 (B:114-227)
1c: CATH_3cfbH02 (H:114-227)
1d: CATH_3cfbA01 (A:1-108)
1e: CATH_3cfbL01 (L:1-108)
1f: CATH_3cfbL02 (L:109-211)
1g: CATH_3cfbB01 (B:2-113)
1h: CATH_3cfbH01 (H:2-113)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
3cfbA02
A:109-211
1b
3cfbB02
B:114-227
1c
3cfbH02
H:114-227
1d
3cfbA01
A:1-108
1e
3cfbL01
L:1-108
1f
3cfbL02
L:109-211
1g
3cfbB01
B:2-113
1h
3cfbH01
H:2-113
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
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