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3CF4
Biol. Unit 1
Info
Asym.Unit (166 KB)
Biol.Unit 1 (312 KB)
Biol.Unit 2 (159 KB)
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(1)
Title
:
STRUCTURE OF THE CODH COMPONENT OF THE M. BARKERI ACDS COMPLEX
Authors
:
W. Gong, B. Hao, Z. Wei, D. J. Ferguson Jr. , T. Tallant, J. A. Krzycki, M.
Date
:
01 Mar 08 (Deposition) - 22 Jul 08 (Release) - 07 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,G
Biol. Unit 1: A,G (2x)
Biol. Unit 2: A,G (1x)
Keywords
:
Methanomicrobia, Iron-Nikel-Sulfur, 4Fe-Ni-4S, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Gong, B. Hao, Z. Wei, D. J. Ferguson Jr. , T. Tallant, J. A. Krzycki, M. K. Chan
Structure Of The Alpha2 Epsilon2 Ni-Dependent Co Dehydrogenase Component Of The Methanosarcina Barkeri Acetyl-Coa Decarboxylase/Synthase Complex
Proc. Natl. Acad. Sci. Usa V. 105 9558 2008
[
close entry info
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Hetero Components
(6, 42)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
2a: CARBON MONOXIDE (CMOa)
3a: FE (III) ION (FEa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
6a: IRON/SULFUR CLUSTER (SF4a)
6b: IRON/SULFUR CLUSTER (SF4b)
6c: IRON/SULFUR CLUSTER (SF4c)
6d: IRON/SULFUR CLUSTER (SF4d)
7a: FE(3)-NI(1)-S(4) CLUSTER (WCCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
22
Ligand/Ion
ACETIC ACID
2
CMO
2
Ligand/Ion
CARBON MONOXIDE
3
FE
-1
Ligand/Ion
FE (III) ION
4
GOL
6
Ligand/Ion
GLYCEROL
5
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
SF4
8
Ligand/Ion
IRON/SULFUR CLUSTER
7
WCC
2
Ligand/Ion
FE(3)-NI(1)-S(4) CLUSTER
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:73 , GLN A:75 , CYS A:77
BINDING SITE FOR RESIDUE SF4 A 809
02
AC2
SOFTWARE
CYS A:76 , TYR A:78 , CYS A:79 , TYR A:81 , GLY A:82 , CYS A:84 , GLY A:92 , CYS A:94 , ARG A:104 , ALA A:184
BINDING SITE FOR RESIDUE SF4 A 810
03
AC3
SOFTWARE
HIS A:250 , CYS A:278 , CYS A:587 , WCC A:811 , HOH A:827
BINDING SITE FOR RESIDUE FE A 808
04
AC4
SOFTWARE
HIS A:250 , CYS A:277 , CYS A:323 , GLY A:522 , CYS A:523 , PRO A:524 , CYS A:552 , CYS A:587 , PHE A:634 , SER A:635 , LYS A:637 , FE A:808 , CMO A:812 , HOH A:827
BINDING SITE FOR RESIDUE WCC A 811
05
AC5
SOFTWARE
HIS A:117 , CYS A:587 , LYS A:637 , ILE A:641 , WCC A:811 , HOH A:827
BINDING SITE FOR RESIDUE CMO A 812
06
AC6
SOFTWARE
CYS A:427 , PRO A:428 , ILE A:433 , CYS A:455 , ILE A:456 , CYS A:458 , ARG A:459 , CYS A:461
BINDING SITE FOR RESIDUE SF4 A 813
07
AC7
SOFTWARE
CYS A:417 , ALA A:418 , ASP A:419 , CYS A:420 , GLY A:421 , CYS A:423 , MET A:437 , CYS A:465
BINDING SITE FOR RESIDUE SF4 A 814
08
AC8
SOFTWARE
ARG A:91 , GLU A:331 , LYS A:334 , ARG A:459
BINDING SITE FOR RESIDUE ACY A 815
09
AC9
SOFTWARE
THR A:406 , ASP A:407 , LYS A:477
BINDING SITE FOR RESIDUE ACY A 816
10
BC1
SOFTWARE
ARG A:571
BINDING SITE FOR RESIDUE ACY A 817
11
BC2
SOFTWARE
MET A:708 , LYS A:711 , TRP A:730 , HIS A:734 , HOH A:951
BINDING SITE FOR RESIDUE ACY A 818
12
BC3
SOFTWARE
GLU A:430 , HOH A:1017 , HOH A:1117 , LYS G:117 , ARG G:141
BINDING SITE FOR RESIDUE ACY A 819
13
BC4
SOFTWARE
ARG A:353
BINDING SITE FOR RESIDUE ACY A 820
14
BC5
SOFTWARE
PRO A:67 , ILE A:69 , LYS A:99 , HOH A:1216 , ALA G:127 , PHE G:131
BINDING SITE FOR RESIDUE ACY A 821
15
BC6
SOFTWARE
LYS A:735 , THR A:760 , HOH A:1047
BINDING SITE FOR RESIDUE ACY A 822
16
BC7
SOFTWARE
LEU A:108 , ARG A:109 , THR A:112 , VAL A:182 , GLN A:636
BINDING SITE FOR RESIDUE ACY A 823
17
BC8
SOFTWARE
ASP A:290 , ARG A:291 , ARG A:292 , ARG A:607 , GLN A:796 , HOH A:1027
BINDING SITE FOR RESIDUE ACY A 824
18
BC9
SOFTWARE
ARG A:607 , ARG A:623 , GLN A:796 , PRO A:797 , HOH A:999 , HOH A:1159
BINDING SITE FOR RESIDUE GOL A 825
19
CC1
SOFTWARE
MET A:259 , LEU A:283 , TYR A:286 , GLU A:288 , PRO A:293 , PRO A:294 , TYR A:295 , ALA A:296 , HOH A:929 , HOH A:959
BINDING SITE FOR RESIDUE GOL A 826
20
CC2
SOFTWARE
THR A:669 , GLU A:744 , HOH A:1177 , TRP G:99
BINDING SITE FOR RESIDUE ACY G 171
21
CC3
SOFTWARE
LEU A:424 , LEU A:425 , HOH A:1017 , LYS G:118 , ARG G:141 , GLY G:142 , ASN G:153 , HOH G:216 , HOH G:247
BINDING SITE FOR RESIDUE GOL G 172
22
CC4
SOFTWARE
LEU G:134 , THR G:136 , ASN G:146 , THR G:148 , HOH G:259
BINDING SITE FOR RESIDUE PEG G 173
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: 4FE4S_FER_2 (A:446-475)
2: 4FE4S_FER_1 (A:417-428)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
4FE4S_FER_2
PS51379
4Fe-4S ferredoxin-type iron-sulfur binding domain profile.
ACDA1_METBF
407-436
446-475
4
A:407-436
A:446-475
2
4FE4S_FER_1
PS00198
4Fe-4S ferredoxin-type iron-sulfur binding region signature.
ACDA1_METBF
417-428
2
A:417-428
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (166 KB)
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