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3CF0
Asym. Unit
Info
Asym.Unit (645 KB)
Biol.Unit 1 (320 KB)
Biol.Unit 2 (320 KB)
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(1)
Title
:
STRUCTURE OF D2 SUBDOMAIN OF P97/VCP IN COMPLEX WITH ADP
Authors
:
J. M. Davies, A. T. Brunger, W. I. Weis
Date
:
01 Mar 08 (Deposition) - 22 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,G,H,M,N (1x)
Biol. Unit 2: D,E,F,I,J,K,L (1x)
Keywords
:
Aaa, P97/Vcp, Erad, Cdc48, Atp-Binding, Lipid-Binding, Nucleotide- Binding, Nucleus, Phosphoprotein, Transport, Ubl Conjugation Pathway, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Davies, A. T. Brunger, W. I. Weis
Improved Structures Of Full-Length P97, An Aaa Atpase: Implications For Mechanisms Of Nucleotide-Dependent Conformational Change.
Structure V. 16 715 2008
[
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
1k: ADENOSINE-5'-DIPHOSPHATE (ADPk)
1l: ADENOSINE-5'-DIPHOSPHATE (ADPl)
1m: ADENOSINE-5'-DIPHOSPHATE (ADPm)
1n: ADENOSINE-5'-DIPHOSPHATE (ADPn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
14
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:478 , ILE A:479 , GLY A:480 , LEU A:482 , GLY A:521 , CYS A:522 , GLY A:523 , LYS A:524 , THR A:525 , LEU A:526 , ILE A:656 , ASN A:660 , GLY A:684 , ALA A:685 , THR A:688
BINDING SITE FOR RESIDUE ADP A 900
02
AC2
SOFTWARE
ASP B:478 , ILE B:479 , GLY B:480 , LEU B:482 , GLY B:521 , CYS B:522 , GLY B:523 , LYS B:524 , THR B:525 , LEU B:526 , ILE B:656 , ASN B:660 , GLY B:684 , ALA B:685 , THR B:688
BINDING SITE FOR RESIDUE ADP B 900
03
AC3
SOFTWARE
ASP C:478 , GLY C:480 , LEU C:482 , GLY C:521 , CYS C:522 , GLY C:523 , LYS C:524 , THR C:525 , LEU C:526 , ILE C:656 , ASN C:660 , GLY C:684 , ALA C:685 , THR C:688
BINDING SITE FOR RESIDUE ADP C 900
04
AC4
SOFTWARE
ASP D:478 , ILE D:479 , GLY D:480 , LEU D:482 , GLY D:521 , CYS D:522 , GLY D:523 , LYS D:524 , THR D:525 , LEU D:526 , ILE D:656 , ASN D:660 , GLY D:684 , ALA D:685 , THR D:688
BINDING SITE FOR RESIDUE ADP D 900
05
AC5
SOFTWARE
ASP E:478 , GLY E:480 , GLY E:521 , CYS E:522 , GLY E:523 , LYS E:524 , THR E:525 , LEU E:526 , ILE E:656 , ASN E:660 , GLY E:684 , ALA E:685 , THR E:688
BINDING SITE FOR RESIDUE ADP E 900
06
AC6
SOFTWARE
ASP F:478 , ILE F:479 , GLY F:480 , GLY F:521 , CYS F:522 , GLY F:523 , LYS F:524 , THR F:525 , LEU F:526 , ILE F:656 , ASN F:660 , GLY F:684 , ALA F:685 , THR F:688
BINDING SITE FOR RESIDUE ADP F 900
07
AC7
SOFTWARE
ASP G:478 , ILE G:479 , GLY G:480 , LEU G:482 , GLY G:521 , CYS G:522 , GLY G:523 , LYS G:524 , THR G:525 , LEU G:526 , ILE G:656 , ASN G:660 , GLY G:684 , ALA G:685 , THR G:688
BINDING SITE FOR RESIDUE ADP G 900
08
AC8
SOFTWARE
ASP H:478 , ILE H:479 , GLY H:480 , LEU H:482 , GLY H:521 , CYS H:522 , GLY H:523 , LYS H:524 , THR H:525 , LEU H:526 , ILE H:656 , ASN H:660 , GLY H:684 , ALA H:685 , THR H:688
BINDING SITE FOR RESIDUE ADP H 900
09
AC9
SOFTWARE
ASP I:478 , ILE I:479 , GLY I:480 , GLY I:521 , CYS I:522 , GLY I:523 , LYS I:524 , THR I:525 , LEU I:526 , ILE I:656 , ASN I:660 , GLY I:684 , ALA I:685 , THR I:688
BINDING SITE FOR RESIDUE ADP I 900
10
BC1
SOFTWARE
ASP J:478 , ILE J:479 , GLY J:480 , PRO J:520 , GLY J:521 , CYS J:522 , GLY J:523 , LYS J:524 , THR J:525 , LEU J:526 , ILE J:656 , ASN J:660 , GLY J:684 , ALA J:685 , THR J:688
BINDING SITE FOR RESIDUE ADP J 900
11
BC2
SOFTWARE
ASP K:478 , ILE K:479 , GLY K:480 , LEU K:482 , PRO K:520 , GLY K:521 , CYS K:522 , GLY K:523 , LYS K:524 , THR K:525 , LEU K:526 , ILE K:656 , ASN K:660 , GLY K:684 , ALA K:685 , THR K:688
BINDING SITE FOR RESIDUE ADP K 900
12
BC3
SOFTWARE
ASP L:478 , ILE L:479 , GLY L:480 , LEU L:482 , PRO L:520 , GLY L:521 , CYS L:522 , GLY L:523 , LYS L:524 , THR L:525 , LEU L:526 , ILE L:656 , ASN L:660 , GLY L:684 , ALA L:685 , THR L:688
BINDING SITE FOR RESIDUE ADP L 900
13
BC4
SOFTWARE
ASP M:478 , ILE M:479 , GLY M:480 , LEU M:482 , PRO M:520 , GLY M:521 , CYS M:522 , GLY M:523 , LYS M:524 , THR M:525 , LEU M:526 , ILE M:656 , ASN M:660 , GLY M:684 , ALA M:685 , THR M:688
BINDING SITE FOR RESIDUE ADP M 900
14
BC5
SOFTWARE
ASP N:478 , ILE N:479 , GLY N:480 , LEU N:482 , PRO N:520 , GLY N:521 , CYS N:522 , GLY N:523 , LYS N:524 , THR N:525 , LEU N:526 , ILE N:656 , ASN N:660 , GLY N:684 , ALA N:685 , THR N:688
BINDING SITE FOR RESIDUE ADP N 900
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 14)
Info
All PROSITE Patterns/Profiles
1: AAA (-|A:617-635,B:617-635,C:617-635,D:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AAA
PS00674
AAA-protein family signature.
TERA_MOUSE
341-359
617-635
14
-
A:617-635
B:617-635
C:617-635
D:617-635
E:617-635
F:617-635
G:617-635
H:617-635
I:617-635
J:617-635
K:617-635
L:617-635
M:617-635
N:617-635
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (645 KB)
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