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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3CCK
Asym. Unit
Info
Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
HUMAN CD69
Authors
:
J. Brynda, O. Vanek, P. Rezacova
Date
:
26 Feb 08 (Deposition) - 25 Nov 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Leukocyte Activation, C-Type Lectin, Refolding, Stability, Ligand Binding, Tumor Therapies, Glycoprotein, Membrane, Phosphoprotein, Signal-Anchor, Transmembrane, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Vanek, M. Nalezkova, D. Kavan, I. Borovickova, P. Pompach, P. Novak V. Kumar, L. Vannucci, J. Hudecek, K. Hofbauerova, V. Kopecky, J. Brynda, P. Kolenko, J. Dohnalek, P. Kaderavek, J. Chmelik, L. Gorcik, L. Zidek, V. Sklenar, K. Bezouska
Soluble Recombinant Cd69 Receptors Optimized To Have An Exceptional Physical And Chemical Stability Display Prolonged Circulation And Remain Intact In The Blood Of Mic
Febs J. V. 275 5589 2008
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:103 , LYS B:103
BINDING SITE FOR RESIDUE CL A 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:92-195,B:92-195)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
CD69_HUMAN
92-195
2
A:92-195
B:92-195
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Exons
(3, 6)
Info
All Exons
Exon 1.3a (A:83-129 | B:82-129)
Exon 1.4 (A:130-164 | B:130-164)
Exon 1.5 (A:164-199 | B:164-199)
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All Exon Boundaries
1: Boundary 1.2/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000228434
1
ENSE00000821823
chr12:
9913497-9913353
145
CD69_HUMAN
1-22
22
0
-
-
1.2
ENST00000228434
2
ENSE00000718673
chr12:
9909015-9908893
123
CD69_HUMAN
22-63
42
0
-
-
1.3a
ENST00000228434
3a
ENSE00000718665
chr12:
9907857-9907658
200
CD69_HUMAN
63-129
67
2
A:83-129
B:82-129
47
48
1.4
ENST00000228434
4
ENSE00000718659
chr12:
9907286-9907183
104
CD69_HUMAN
130-164
35
2
A:130-164
B:130-164
35
35
1.5
ENST00000228434
5
ENSE00000821822
chr12:
9906185-9905082
1104
CD69_HUMAN
164-199
36
2
A:164-199
B:164-199
36
36
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ccka_ (A:)
1b: SCOP_d3cckb_ (B:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d3ccka_
A:
1b
d3cckb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3cckB00 (B:82-199)
1b: CATH_3cckA00 (A:83-199)
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Classes
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(
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
3cckB00
B:82-199
1b
3cckA00
A:83-199
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Chain A
Chain B
Asymmetric Unit 1
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Asym.Unit (47 KB)
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