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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3CBY
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
THE DVL2 PDZ DOMAIN IN COMPLEX WITH THE N1 INHIBITORY PEPTIDE
Authors
:
B. A. Appleton, C. Wiesmann
Date
:
23 Feb 08 (Deposition) - 03 Mar 09 (Release) - 31 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Pdz Domain, Phage Derived High Affinity Ligand, Cytoplasm, Developmental Protein, Phosphoprotein, Wnt Signaling Pathway, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, B. A. Appleton, C. Wiesmann, T. Lau, M. Costa, R. N. Hannoush, S. S. Sidhu
Inhibition Of Wnt Signaling By Dishevelled Pdz Peptides
Nat. Chem. Biol. V. 5 217 2009
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:298 , ASP A:360 , GLY A:362 , HOH B:1193
BINDING SITE FOR RESIDUE EDO A2002
2
AC2
SOFTWARE
SER B:298 , ASP B:360 , GLY B:362 , TRP B:363 , HOH B:1193
BINDING SITE FOR RESIDUE EDO B2001
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_064708 (I282T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064708
I
282
T
DVL2_HUMAN
Unclassified
---
A/B
I
282
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:267-339,B:267-339)
2: DEP (A:361-366)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
DVL2_HUMAN
267-339
2
A:267-339
B:267-339
2
DEP
PS50186
DEP domain profile.
DVL2_HUMAN
433-507
1
A:361-366
[
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]
Exons
(6, 11)
Info
All Exons
Exon 1.7 (A:261-273 (gaps) | B:264-273)
Exon 1.8 (A:273-319 (gaps) | B:273-319 (gaps...)
Exon 1.9 (A:320-345 | B:320-345)
Exon 1.10 (A:345-353 | B:345-354)
Exon 1.11 (A:354-360 | B:357-367 (gaps))
Exon 1.13 (A:361-367 | -)
View:
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Label:
All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12
7: Boundary 1.12/1.13
8: Boundary 1.13/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000005340
1
ENSE00001296084
chr17:
7137868-7137388
481
DVL2_HUMAN
1-65
65
0
-
-
1.2
ENST00000005340
2
ENSE00001741150
chr17:
7134116-7134047
70
DVL2_HUMAN
65-88
24
0
-
-
1.3
ENST00000005340
3
ENSE00001282250
chr17:
7133749-7133604
146
DVL2_HUMAN
89-137
49
0
-
-
1.4
ENST00000005340
4
ENSE00001282244
chr17:
7133474-7133365
110
DVL2_HUMAN
137-174
38
0
-
-
1.5
ENST00000005340
5
ENSE00001143281
chr17:
7133262-7133127
136
DVL2_HUMAN
174-219
46
0
-
-
1.6
ENST00000005340
6
ENSE00001282234
chr17:
7132997-7132907
91
DVL2_HUMAN
219-249
31
0
-
-
1.7
ENST00000005340
7
ENSE00001282226
chr17:
7132766-7132697
70
DVL2_HUMAN
250-273
24
2
A:261-273 (gaps)
B:264-273
15
10
1.8
ENST00000005340
8
ENSE00001767013
chr17:
7132593-7132454
140
DVL2_HUMAN
273-319
47
2
A:273-319 (gaps)
B:273-319 (gaps)
47
47
1.9
ENST00000005340
9
ENSE00001783234
chr17:
7132364-7132288
77
DVL2_HUMAN
320-345
26
2
A:320-345
B:320-345
26
26
1.10
ENST00000005340
10
ENSE00001282202
chr17:
7131363-7131296
68
DVL2_HUMAN
345-368
24
2
A:345-353
B:345-354
9
10
1.11
ENST00000005340
11
ENSE00001282195
chr17:
7131102-7130974
129
DVL2_HUMAN
368-411
44
2
A:354-360
B:357-367 (gaps)
7
12
1.12
ENST00000005340
12
ENSE00001282187
chr17:
7130854-7130723
132
DVL2_HUMAN
411-455
45
0
-
-
1.13
ENST00000005340
13
ENSE00001282182
chr17:
7130588-7130409
180
DVL2_HUMAN
455-515
61
1
A:361-367
-
7
-
1.14
ENST00000005340
14
ENSE00000887269
chr17:
7129958-7129740
219
DVL2_HUMAN
515-588
74
0
-
-
1.15
ENST00000005340
15
ENSE00001061609
chr17:
7129632-7128660
973
DVL2_HUMAN
588-736
149
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3cbya_ (A:)
1b: SCOP_d3cbyb_ (B:)
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(
)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
Segment polarity protein dishevelled homolog Dvl-2
(8)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3cbya_
A:
1b
d3cbyb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3cbyB00 (B:264-367)
1b: CATH_3cbyA00 (A:261-367)
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Organisms
(
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
3cbyB00
B:264-367
1b
3cbyA00
A:261-367
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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