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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3CBJ
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (126 KB)
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(1)
Title
:
CHAGASIN-CATHEPSIN B COMPLEX
Authors
:
I. Redzynia, G. D. Bujacz, M. Abrahamson, A. Ljunggren, M. Jaskolski, J
Date
:
22 Feb 08 (Deposition) - 27 May 08 (Release) - 19 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Chagasin, Cathepsin B, Occluding Loop, Chagas Disease, Glycoprotein, Hydrolase, Lysosome, Protease, Thiol Protease, Zymogen, Cytoplasmic Vesicle, Protease Inhibitor, Thiol Protease Inhibitor, Hydrolase- Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
I. Redzynia, A. Ljunggren, M. Abrahamson, J. S. Mort, J. C. Krupa, M. Jaskolski, G. Bujacz
Displacement Of The Occluding Loop By The Parasite Protein, Chagasin, Results In Efficient Inhibition Of Human Cathepsi B.
J. Biol. Chem. V. 283 22815 2008
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:62 , PHE A:82 , LYS A:86 , LYS A:130 , TYR A:140 , LYS A:144
BINDING SITE FOR RESIDUE PO4 A 261
2
AC2
SOFTWARE
GLU A:57 , ARG A:101 , PRO A:126 , LYS A:127 , SER A:129 , ASN B:110
BINDING SITE FOR RESIDUE PO4 A 262
3
AC3
SOFTWARE
GLU B:23 , HIS B:72 , HIS B:74
BINDING SITE FOR RESIDUE PO4 B 111
4
AC4
SOFTWARE
ASN A:155 , ASP A:227 , LYS A:232 , SER A:244
BINDING SITE FOR RESIDUE PO4 A 263
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051512 (P12L, chain A, )
2: VAR_014696 (S156N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051512
P
91
L
CATB_HUMAN
Polymorphism
11548596
A
P
12
L
2
UniProt
VAR_014696
S
235
N
CATB_HUMAN
Polymorphism
17573
A
S
156
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (A:23-34)
2: THIOL_PROTEASE_HIS (A:197-207)
3: THIOL_PROTEASE_ASN (A:214-233)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATB_HUMAN
102-113
1
A:23-34
2
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATB_HUMAN
276-286
1
A:197-207
3
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATB_HUMAN
293-312
1
A:214-233
[
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Exons
(7, 7)
Info
All Exons
Exon 1.15e (A:60P-30 (gaps))
Exon 1.17f (A:31-70)
Exon 1.18h (A:70-99)
Exon 1.19b (A:99-147)
Exon 1.20d (A:147-186)
Exon 1.21a (A:186-229)
Exon 1.22h (A:229-255)
View:
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All Exon Boundaries
1: Boundary 1.14b/1.15e
2: Boundary 1.15e/1.17f
3: Boundary 1.17f/1.18h
4: Boundary 1.18h/1.19b
5: Boundary 1.19b/1.20d
6: Boundary 1.20d/1.21a
7: Boundary 1.21a/1.22h
8: Boundary 1.22h/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000353047
4a
ENSE00001831074
chr8:
11725738-11725510
229
CATB_HUMAN
-
0
0
-
-
1.13e
ENST00000353047
13e
ENSE00002149435
chr8:
11710988-11710838
151
CATB_HUMAN
1-42
42
0
-
-
1.14b
ENST00000353047
14b
ENSE00002152237
chr8:
11710204-11710119
86
CATB_HUMAN
43-71
29
0
-
-
1.15e
ENST00000353047
15e
ENSE00001087019
chr8:
11708489-11708375
115
CATB_HUMAN
71-109
39
1
A:60P-30 (gaps)
34
1.17f
ENST00000353047
17f
ENSE00002158636
chr8:
11706673-11706555
119
CATB_HUMAN
110-149
40
1
A:31-70
40
1.18h
ENST00000353047
18h
ENSE00001087012
chr8:
11705661-11705576
86
CATB_HUMAN
149-178
30
1
A:70-99
30
1.19b
ENST00000353047
19b
ENSE00001087016
chr8:
11705331-11705188
144
CATB_HUMAN
178-226
49
1
A:99-147
49
1.20d
ENST00000353047
20d
ENSE00001087013
chr8:
11704677-11704561
117
CATB_HUMAN
226-265
40
1
A:147-186
40
1.21a
ENST00000353047
21a
ENSE00001087015
chr8:
11703298-11703170
129
CATB_HUMAN
265-308
44
1
A:186-229
44
1.22h
ENST00000353047
22h
ENSE00002162645
chr8:
11702731-11700317
2415
CATB_HUMAN
308-339
32
1
A:229-255
27
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3cbjb_ (B:)
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Protein Domains
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(
)
Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
ICP-like
(10)
Family
:
ICP-like
(9)
Protein domain
:
Chagasin
(8)
Trypanosoma cruzi [TaxId: 5693]
(8)
1a
d3cbjb_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3cbjA00 (A:60P-255)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Human (Homo sapiens)
(92)
1a
3cbjA00
A:60P-255
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (69 KB)
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