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3CAY
Biol. Unit 1
Info
Asym.Unit (141 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LIPOPEPTIDE DETERGENT (LPD-12)
Authors
:
D. N. Ho, N. C. Pomroy, J. A. Cuesta-Seijo, G. G. Prive
Date
:
20 Feb 08 (Deposition) - 09 Sep 08 (Release) - 29 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: I,J,K,L (2x)
Keywords
:
Alpha Helix, Acyl Chains, Detergent, Amphiphilic, Lipopeptide, Self-Assembling Peptide, De Novo Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. N. Ho, N. C. Pomroy, J. A. Cuesta-Seijo, G. G. Prive
Crystal Structure Of A Self-Assembling Lipopeptide Detergent At 1. 20 A.
Proc. Natl. Acad. Sci. Usa V. 105 12861 2008
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(4, 44)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
1e: ACETYL GROUP (ACEe)
1f: ACETYL GROUP (ACEf)
1g: ACETYL GROUP (ACEg)
1h: ACETYL GROUP (ACEh)
1i: ACETYL GROUP (ACEi)
1j: ACETYL GROUP (ACEj)
1k: ACETYL GROUP (ACEk)
1l: ACETYL GROUP (ACEl)
2a: DODECYL-BETA-D-MALTOSIDE (LMTa)
2b: DODECYL-BETA-D-MALTOSIDE (LMTb)
2c: DODECYL-BETA-D-MALTOSIDE (LMTc)
2d: DODECYL-BETA-D-MALTOSIDE (LMTd)
2e: DODECYL-BETA-D-MALTOSIDE (LMTe)
2f: DODECYL-BETA-D-MALTOSIDE (LMTf)
2g: DODECYL-BETA-D-MALTOSIDE (LMTg)
2h: DODECYL-BETA-D-MALTOSIDE (LMTh)
2i: DODECYL-BETA-D-MALTOSIDE (LMTi)
2j: DODECYL-BETA-D-MALTOSIDE (LMTj)
2k: DODECYL-BETA-D-MALTOSIDE (LMTk)
2l: DODECYL-BETA-D-MALTOSIDE (LMTl)
2m: DODECYL-BETA-D-MALTOSIDE (LMTm)
2n: DODECYL-BETA-D-MALTOSIDE (LMTn)
2o: DODECYL-BETA-D-MALTOSIDE (LMTo)
2p: DODECYL-BETA-D-MALTOSIDE (LMTp)
2q: DODECYL-BETA-D-MALTOSIDE (LMTq)
2r: DODECYL-BETA-D-MALTOSIDE (LMTr)
2s: DODECYL-BETA-D-MALTOSIDE (LMTs)
2t: DODECYL-BETA-D-MALTOSIDE (LMTt)
2u: DODECYL-BETA-D-MALTOSIDE (LMTu)
2v: DODECYL-BETA-D-MALTOSIDE (LMTv)
3a: AMINO GROUP (NH2a)
3b: AMINO GROUP (NH2b)
3c: AMINO GROUP (NH2c)
3d: AMINO GROUP (NH2d)
3e: AMINO GROUP (NH2e)
3f: AMINO GROUP (NH2f)
3g: AMINO GROUP (NH2g)
3h: AMINO GROUP (NH2h)
3i: AMINO GROUP (NH2i)
3j: AMINO GROUP (NH2j)
3k: AMINO GROUP (NH2k)
3l: AMINO GROUP (NH2l)
4a: N~5~-DODECANOYL-L-ORNITHINE (O12a)
4b: N~5~-DODECANOYL-L-ORNITHINE (O12b)
4c: N~5~-DODECANOYL-L-ORNITHINE (O12c)
4d: N~5~-DODECANOYL-L-ORNITHINE (O12d)
4e: N~5~-DODECANOYL-L-ORNITHINE (O12e)
4f: N~5~-DODECANOYL-L-ORNITHINE (O12f)
4g: N~5~-DODECANOYL-L-ORNITHINE (O12g)
4h: N~5~-DODECANOYL-L-ORNITHINE (O12h)
4i: N~5~-DODECANOYL-L-ORNITHINE (O12i)
4j: N~5~-DODECANOYL-L-ORNITHINE (O12j)
4k: N~5~-DODECANOYL-L-ORNITHINE (O12k)
4l: N~5~-DODECANOYL-L-ORNITHINE (O12l)
4m: N~5~-DODECANOYL-L-ORNITHINE (O12m)
4n: N~5~-DODECANOYL-L-ORNITHINE (O12n)
4o: N~5~-DODECANOYL-L-ORNITHINE (O12o)
4p: N~5~-DODECANOYL-L-ORNITHINE (O12p)
4q: N~5~-DODECANOYL-L-ORNITHINE (O12q)
4r: N~5~-DODECANOYL-L-ORNITHINE (O12r)
4s: N~5~-DODECANOYL-L-ORNITHINE (O12s)
4t: N~5~-DODECANOYL-L-ORNITHINE (O12t)
4u: N~5~-DODECANOYL-L-ORNITHINE (O12u)
4v: N~5~-DODECANOYL-L-ORNITHINE (O12v)
4w: N~5~-DODECANOYL-L-ORNITHINE (O12w)
4x: N~5~-DODECANOYL-L-ORNITHINE (O12x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
8
Mod. Amino Acid
ACETYL GROUP
2
LMT
12
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
3
NH2
8
Mod. Amino Acid
AMINO GROUP
4
O12
16
Mod. Amino Acid
N~5~-DODECANOYL-L-ORNITHINE
[
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Sites
(12, 12)
Info
All Sites
01: FC4 (SOFTWARE)
02: FC5 (SOFTWARE)
03: FC6 (SOFTWARE)
04: FC7 (SOFTWARE)
05: FC8 (SOFTWARE)
06: GC1 (SOFTWARE)
07: GC2 (SOFTWARE)
08: GC3 (SOFTWARE)
09: GC4 (SOFTWARE)
10: GC5 (SOFTWARE)
11: GC6 (SOFTWARE)
12: HC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
FC4
SOFTWARE
ALA A:9 , LYS H:8 , LYS H:11 , GLU H:15 , HOH H:509 , HOH H:511 , HOH H:521 , HOH H:522 , HOH H:525 , HOH H:526 , HOH H:529 , HOH H:544 , HOH K:544 , LYS L:11 , GLU L:15
BINDING SITE FOR RESIDUE LMT H 501
02
FC5
SOFTWARE
ALA B:20 , HOH B:240
BINDING SITE FOR RESIDUE LMT B 502
03
FC6
SOFTWARE
ALA B:16 , LYS C:8 , ALA C:9 , TYR C:12 , HOH C:521 , HOH C:533
BINDING SITE FOR RESIDUE LMT C 503
04
FC7
SOFTWARE
ALA A:10 , LYS B:8 , ALA B:9 , ALA B:10 , TYR B:12 , HOH B:342 , HOH B:343 , TYR C:12
BINDING SITE FOR RESIDUE LMT B 504
05
FC8
SOFTWARE
ALA C:20
BINDING SITE FOR RESIDUE LMT C 505
06
GC1
SOFTWARE
ALA E:9 , TYR E:12
BINDING SITE FOR RESIDUE LMT E 507
07
GC2
SOFTWARE
TYR F:12 , LYS G:8 , ALA G:9 , TYR G:12 , HOH G:67 , HOH G:402
BINDING SITE FOR RESIDUE LMT G 508
08
GC3
SOFTWARE
ALA F:5 , LYS F:8 , HOH F:525
BINDING SITE FOR RESIDUE LMT F 509
09
GC4
SOFTWARE
TYR F:12 , ALA G:10
BINDING SITE FOR RESIDUE LMT G 510
10
GC5
SOFTWARE
ALA H:10
BINDING SITE FOR RESIDUE LMT C 511
11
GC6
SOFTWARE
LYS A:8 , LYS A:11 , GLU A:15 , HOH A:514 , HOH A:524 , HOH A:526 , HOH A:530 , HOH A:532 , HOH A:534 , HOH A:548 , LYS E:11 , GLU E:15 , HOH E:508
BINDING SITE FOR RESIDUE LMT A 512
12
HC3
SOFTWARE
ALA C:25 , HOH I:523
BINDING SITE FOR RESIDUE LMT K 518
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Chain F
Chain G
Chain H
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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