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Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (20 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SECOND AND THIRD FIBRONECTIN F1 MODULES IN COMPLEX WITH A FRAGMENT OF STAPHYLOCOCCUS AUREUS FNBPA-5
Authors
:
R. J. Bingham
Date
:
20 Feb 08 (Deposition) - 05 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Fibronectin, 2F13F1, Beta Zipper, Staphylococcus Aureus, Acute Phase, Alternative Splicing, Cell Adhesion, Extracellular Matrix, Glycoprotein, Heparin-Binding, Phosphoprotein, Polymorphism, Pyrrolidone Carboxylic Acid, Secreted, Sulfation, Cell Wall, Peptidoglycan-Anchor, Virulence
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. J. Bingham, N. A. Meenan, U. Schwarz-Linek, J. P. Turkenburg, E. F. Garman, J. R. Potts
Crystal Structures Of Fibronectin-Binding Sites From Staphylococcus Aureus Fnbpa In Complex With Fibronectin Domains
Proc. Natl. Acad. Sci. Usa V. 105 12254 2008
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Ligand/Ion
AMINO GROUP
[
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Sites
(0, 0)
Info
All Sites
View:
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: FN1_2 (-|A:64-107,C:64-107|A:108-151,C:10...)
2: FN1_1 (-|A:66-104,C:66-104|A:110-148,C:11...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN1_2
PS51091
Fibronectin type-I domain profile.
FINC_HUMAN
50-90
95-138
139-182
184-228
229-273
306-345
468-511
516-558
559-602
2204-2248
2249-2291
2293-2333
4
-
A:64-107
C:64-107
A:108-151
C:108-151
-
-
-
-
-
-
-
-
-
2
FN1_1
PS01253
Fibronectin type-I domain signature.
FINC_HUMAN
52-87
97-135
141-179
186-225
231-270
308-342
470-508
518-555
561-599
2206-2245
2251-2288
2295-2330
4
-
A:66-104
C:66-104
A:110-148
C:110-148
-
-
-
-
-
-
-
-
-
[
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]
Exons
(2, 4)
Info
All Exons
Exon 1.3 (A:63-108 | C:63-108)
Exon 1.4 (A:108-151 (gaps) | C:108-151 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000359671
1c
ENSE00001245714
chr2:
216300791-216300378
414
FINC_HUMAN
1-50
50
0
-
-
1.2
ENST00000359671
2
ENSE00001342487
chr2:
216299547-216299419
129
FINC_HUMAN
50-93
44
0
-
-
1.3
ENST00000359671
3
ENSE00001146266
chr2:
216298184-216298047
138
FINC_HUMAN
93-139
47
2
A:63-108
C:63-108
46
46
1.4
ENST00000359671
4
ENSE00001342465
chr2:
216296687-216296556
132
FINC_HUMAN
139-183
45
2
A:108-151 (gaps)
C:108-151 (gaps)
44
44
1.5
ENST00000359671
5
ENSE00001342461
chr2:
216295575-216295438
138
FINC_HUMAN
183-229
47
0
-
-
1.6
ENST00000359671
6
ENSE00001146236
chr2:
216293061-216292903
159
FINC_HUMAN
229-282
54
0
-
-
1.7
ENST00000359671
7
ENSE00001245674
chr2:
216290008-216289817
192
FINC_HUMAN
282-346
65
0
-
-
1.8
ENST00000359671
8
ENSE00001245669
chr2:
216289048-216288869
180
FINC_HUMAN
346-406
61
0
-
-
1.9
ENST00000359671
9
ENSE00001146209
chr2:
216288249-216288073
177
FINC_HUMAN
406-465
60
0
-
-
1.10
ENST00000359671
10
ENSE00001245657
chr2:
216286966-216286814
153
FINC_HUMAN
465-516
52
0
-
-
1.11b
ENST00000359671
11b
ENSE00001342442
chr2:
216285524-216285396
129
FINC_HUMAN
516-559
44
0
-
-
1.12b
ENST00000359671
12b
ENSE00001146180
chr2:
216284108-216283965
144
FINC_HUMAN
559-607
49
0
-
-
1.13a
ENST00000359671
13a
ENSE00001223232
chr2:
216279681-216279560
122
FINC_HUMAN
607-647
41
0
-
-
1.14a
ENST00000359671
14a
ENSE00001342433
chr2:
216274837-216274657
181
FINC_HUMAN
648-708
61
0
-
-
1.14c
ENST00000359671
14c
ENSE00001342429
chr2:
216274462-216274286
177
FINC_HUMAN
708-767
60
0
-
-
1.15b
ENST00000359671
15b
ENSE00001146152
chr2:
216273149-216273021
129
FINC_HUMAN
767-810
44
0
-
-
1.16
ENST00000359671
16
ENSE00001342422
chr2:
216272920-216272831
90
FINC_HUMAN
810-840
31
0
-
-
1.17
ENST00000359671
17
ENSE00001342419
chr2:
216272044-216271850
195
FINC_HUMAN
840-905
66
0
-
-
1.18
ENST00000359671
18
ENSE00001342416
chr2:
216271233-216270961
273
FINC_HUMAN
905-996
92
0
-
-
1.19
ENST00000359671
19
ENSE00001146122
chr2:
216269378-216269112
267
FINC_HUMAN
996-1085
90
0
-
-
1.20
ENST00000359671
20
ENSE00001146112
chr2:
216264074-216263980
95
FINC_HUMAN
1085-1116
32
0
-
-
1.21b
ENST00000359671
21b
ENSE00000965892
chr2:
216262571-216262403
169
FINC_HUMAN
1117-1173
57
0
-
-
1.22
ENST00000359671
22
ENSE00001146105
chr2:
216261946-216261860
87
FINC_HUMAN
1173-1202
30
0
-
-
1.23
ENST00000359671
23
ENSE00001342408
chr2:
216259442-216259251
192
FINC_HUMAN
1202-1266
65
0
-
-
1.25c
ENST00000359671
25c
ENSE00001146412
chr2:
216256537-216256355
183
FINC_HUMAN
1266-1327
62
0
-
-
1.26
ENST00000359671
26
ENSE00001342403
chr2:
216253024-216252935
90
FINC_HUMAN
1327-1357
31
0
-
-
1.27a
ENST00000359671
27a
ENSE00001342401
chr2:
216251681-216251412
270
FINC_HUMAN
1357-1447
91
0
-
-
1.28a
ENST00000359671
28a
ENSE00001342398
chr2:
216249699-216249583
117
FINC_HUMAN
1447-1486
40
0
-
-
1.28c
ENST00000359671
28c
ENSE00001146062
chr2:
216248907-216248743
165
FINC_HUMAN
1486-1541
56
0
-
-
1.29
ENST00000359671
29
ENSE00001342394
chr2:
216248206-216248051
156
FINC_HUMAN
1541-1593
53
0
-
-
1.30a
ENST00000359671
30a
ENSE00001146049
chr2:
216247048-216246935
114
FINC_HUMAN
1593-1631
39
0
-
-
1.30f
ENST00000359671
30f
ENSE00001245789
chr2:
216245803-216245534
270
FINC_HUMAN
1631-1721
91
0
-
-
1.30h
ENST00000359671
30h
ENSE00001342389
chr2:
216244040-216243853
188
FINC_HUMAN
1721-1783
63
0
-
-
1.31
ENST00000359671
31
ENSE00001342388
chr2:
216242985-216242898
88
FINC_HUMAN
1784-1813
30
0
-
-
1.32
ENST00000359671
32
ENSE00001245772
chr2:
216241397-216241221
177
FINC_HUMAN
1813-1872
60
0
-
-
1.33c
ENST00000359671
33c
ENSE00001342219
chr2:
216240441-216240352
90
FINC_HUMAN
1872-1902
31
0
-
-
1.34
ENST00000359671
34
ENSE00001145995
chr2:
216240116-216239937
180
FINC_HUMAN
1902-1962
61
0
-
-
1.35
ENST00000359671
35
ENSE00001145987
chr2:
216238134-216238045
90
FINC_HUMAN
1962-1992
31
0
-
-
1.36d
ENST00000359671
36d
ENSE00001145978
chr2:
216237098-216236632
467
FINC_HUMAN
1992-2147
156
0
-
-
1.37d
ENST00000359671
37d
ENSE00001342210
chr2:
216235155-216235017
139
FINC_HUMAN
2148-2194
47
0
-
-
1.38a
ENST00000359671
38a
ENSE00001603320
chr2:
216232750-216232586
165
FINC_HUMAN
2194-2249
56
0
-
-
1.39c
ENST00000359671
39c
ENSE00001598844
chr2:
216230353-216230228
126
FINC_HUMAN
2249-2291
43
0
-
-
1.40a
ENST00000359671
40a
ENSE00001649647
chr2:
216229708-216229602
107
FINC_HUMAN
2291-2326
36
0
-
-
1.41b
ENST00000359671
41b
ENSE00001740966
chr2:
216226802-216226692
111
FINC_HUMAN
2327-2363
37
0
-
-
1.42f
ENST00000359671
42f
ENSE00001696465
chr2:
216226349-216225181
1169
FINC_HUMAN
2364-2386
23
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3cala1 (A:63-108)
1b: SCOP_d3cala2 (A:109-151)
1c: SCOP_d3calc1 (C:63-108)
1d: SCOP_d3calc2 (C:109-151)
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)
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
FnI-like domain
(17)
Superfamily
:
FnI-like domain
(17)
Family
:
Fibronectin type I module
(15)
Protein domain
:
Fibronectin
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d3cala1
A:63-108
1b
d3cala2
A:109-151
1c
d3calc1
C:63-108
1d
d3calc2
C:109-151
[
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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