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3C9T
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
AATHIL COMPLEXED WITH AMPPCP AND TMP
Authors
:
K. M. Mcculloch, C. Kinsland, T. P. Begley, S. E. Ealick
Date
:
18 Feb 08 (Deposition) - 18 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta Barrel, Alpha-Beta Structure, Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Mcculloch, C. Kinsland, T. P. Begley, S. E. Ealick
Structural Studies Of Thiamin Monophosphate Kinase In Complex With Substrates And Products.
Biochemistry V. 47 3810 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
3a: THIAMIN PHOSPHATE (TPSa)
3b: THIAMIN PHOSPHATE (TPSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
2
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
MG
10
Ligand/Ion
MAGNESIUM ION
3
TPS
2
Ligand/Ion
THIAMIN PHOSPHATE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:210
BINDING SITE FOR RESIDUE MG A 309
02
AC2
SOFTWARE
ASP A:43 , ASP A:71
BINDING SITE FOR RESIDUE MG A 310
03
AC3
SOFTWARE
ASP A:43 , ASN B:119
BINDING SITE FOR RESIDUE MG B 311
04
AC4
SOFTWARE
ASP A:210 , ASP A:215 , HIS A:218
BINDING SITE FOR RESIDUE MG A 312
05
AC5
SOFTWARE
ASP A:27 , ASP A:71 , ASP A:207
BINDING SITE FOR RESIDUE MG A 313
06
AC6
SOFTWARE
ASN A:119 , ASP B:43
BINDING SITE FOR RESIDUE MG A 314
07
AC7
SOFTWARE
ASP B:210
BINDING SITE FOR RESIDUE MG B 310
08
AC8
SOFTWARE
ASP B:27 , ASP B:71 , ASP B:207
BINDING SITE FOR RESIDUE MG B 312
09
AC9
SOFTWARE
ASP B:43 , ASP B:71
BINDING SITE FOR RESIDUE MG B 313
10
BC1
SOFTWARE
ASP B:210 , ASP B:215 , HIS B:218
BINDING SITE FOR RESIDUE MG B 314
11
BC2
SOFTWARE
ILE A:12 , ILE A:24 , GLY A:25 , ASP A:26 , ASP A:27 , ASP A:43 , ASP A:71 , ARG A:142 , SER A:209 , HIS A:218 , HOH A:320 , HOH A:322 , ILE B:84 , TYR B:101 , GLY B:117 , GLY B:118 , ASN B:119 , ILE B:120
BINDING SITE FOR RESIDUE ACP B 307
12
BC3
SOFTWARE
GLY A:48 , HIS A:50 , LEU A:164 , ASP A:210 , GLU A:260 , TRP A:303 , HIS A:305
BINDING SITE FOR RESIDUE TPS A 308
13
BC4
SOFTWARE
ILE A:84 , LEU A:86 , TYR A:101 , GLY A:117 , GLY A:118 , ASN A:119 , ILE A:120 , HOH A:318 , HOH A:321 , ILE B:12 , ILE B:24 , GLY B:25 , ASP B:26 , ASP B:27 , ASP B:43 , ASP B:71 , ARG B:142 , SER B:209 , HIS B:218 , HOH B:318
BINDING SITE FOR RESIDUE ACP A 307
14
BC5
SOFTWARE
GLY B:48 , HIS B:50 , LEU B:164 , HIS B:185 , ASP B:210 , GLU B:260 , TRP B:303 , HIS B:305
BINDING SITE FOR RESIDUE TPS B 308
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3c9ta1 (A:0-137)
1b: SCOP_d3c9tb1 (B:-2-137)
2a: SCOP_d3c9ta2 (A:138-306)
2b: SCOP_d3c9tb2 (B:138-306)
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Classes
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)
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
PurM N-terminal domain-like
(31)
Family
:
PurM N-terminal domain-like
(25)
Protein domain
:
Thiamine monophosphate kinase (ThiL) N-terminal domain
(5)
Aquifex aeolicus [TaxId: 63363]
(5)
1a
d3c9ta1
A:0-137
1b
d3c9tb1
B:-2-137
Fold
:
PurM C-terminal domain-like
(31)
Superfamily
:
PurM C-terminal domain-like
(31)
Family
:
PurM C-terminal domain-like
(24)
Protein domain
:
Thiamine monophosphate kinase (ThiL) C-terminal domain
(5)
Aquifex aeolicus [TaxId: 63363]
(5)
2a
d3c9ta2
A:138-306
2b
d3c9tb2
B:138-306
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3c9tB01 (B:-2-140)
1b: CATH_3c9tA01 (A:0-140)
2a: CATH_3c9tA02 (A:141-306)
2b: CATH_3c9tB02 (B:141-306)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.10, no name defined]
(8)
Aquifex aeolicus. Organism_taxid: 63363.
(4)
1a
3c9tB01
B:-2-140
1b
3c9tA01
A:0-140
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2
(8)
Homologous Superfamily
:
Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2
(8)
Aquifex aeolicus. Organism_taxid: 63363.
(4)
2a
3c9tA02
A:141-306
2b
3c9tB02
B:141-306
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (109 KB)
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