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3C9Q
Asym. Unit
Info
Asym.Unit (48 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE UNCHARACTERIZED HUMAN PROTEIN C8ORF32 WITH BOUND PEPTIDE
Authors
:
E. Bitto, C. A. Bingman, J. G. Mccoy, G. E. Wesenberg, G. N. Phillips Jr. For Eukaryotic Structural Genomics (Cesg)
Date
:
18 Feb 08 (Deposition) - 26 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,L
Biol. Unit 1: A,L (1x)
Keywords
:
Medically Relevant, Putative Involvement In Human Inherited Ataxias And Disorders Of Purkinje Cell Degeneration, Candidate Gene Important In The Pathogenesis Of T-Cell Prolymphocytic Leukemia, Gene Associated With Cre-Pathway Activation, Protein Structure Initiative, Psi-2, Center For Eukaryotic Structural Genomics, Cesg, Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Bitto, C. A. Bingman, J. G. Mccoy, G. E. Wesenberg, G. N. Phillips Jr
Crystal Structure Of The Uncharacterized Human Protein C8Orf32 With Bound Peptide.
To Be Published
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO3
1
Ligand/Ion
CARBONATE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:18 , PRO A:103 , PHE A:104
BINDING SITE FOR RESIDUE SO4 A 206
02
AC2
SOFTWARE
LYS A:40 , ARG A:146 , TYR A:163 , PRO A:164 , CYS A:165
BINDING SITE FOR RESIDUE SO4 A 207
03
AC3
SOFTWARE
TRP A:65 , LYS A:66 , GLY A:72 , ASP A:73 , GLY A:74
BINDING SITE FOR RESIDUE SO4 A 208
04
AC4
SOFTWARE
LYS A:117 , SER A:118
BINDING SITE FOR RESIDUE SO4 A 209
05
AC5
SOFTWARE
ARG A:127
BINDING SITE FOR RESIDUE SO4 A 210
06
AC6
SOFTWARE
TYR A:51 , ARG A:199
BINDING SITE FOR RESIDUE CO3 A 211
07
AC7
SOFTWARE
LYS A:60 , ASP A:79 , ASN A:176
BINDING SITE FOR RESIDUE EDO A 212
08
AC8
SOFTWARE
PRO A:16 , CYS A:21 , LYS A:34 , TYR A:38 , GLY A:169
BINDING SITE FOR RESIDUE EDO A 213
09
AC9
SOFTWARE
TRP A:33 , LYS A:34 , PRO A:164
BINDING SITE FOR RESIDUE EDO A 214
10
BC1
SOFTWARE
LYS A:40 , ASN A:41 , ARG A:146 , TRP A:156 , PRO A:160 , CYS A:165
BINDING SITE FOR RESIDUE EDO A 215
11
BC2
SOFTWARE
HIS A:10 , TRP A:65 , GLY A:74 , LYS A:117
BINDING SITE FOR RESIDUE EDO A 216
[
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030882 (V32V, chain A, )
2: VAR_030883 (S93S, chain A, )
3: VAR_030884 (I116I, chain A, )
4: VAR_030885 (C134C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030882
I
32
V
NTAQ1_HUMAN
Polymorphism
6999234
A
V
32
V
2
UniProt
VAR_030883
N
93
S
NTAQ1_HUMAN
Polymorphism
7014678
A
S
93
S
3
UniProt
VAR_030884
F
116
I
NTAQ1_HUMAN
Polymorphism
6470147
A
I
116
I
4
UniProt
VAR_030885
R
134
C
NTAQ1_HUMAN
Polymorphism
3824250
A
C
134
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:8-28)
Exon 1.2 (A:28-61)
Exon 1.3a (A:62-78)
Exon 1.5 (A:79-128)
Exon 1.6 (A:128-170)
Exon 1.8f (A:170-202)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3a
4: Boundary 1.3a/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.8f
7: Boundary 1.8f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000287387
1a
ENSE00001165891
chr8:
124428965-124429172
208
NTAQ1_HUMAN
1-28
28
1
A:8-28
21
1.2
ENST00000287387
2
ENSE00001028349
chr8:
124440164-124440263
100
NTAQ1_HUMAN
28-61
34
1
A:28-61
34
1.3a
ENST00000287387
3a
ENSE00001174412
chr8:
124442223-124442273
51
NTAQ1_HUMAN
62-78
17
1
A:62-78
17
1.5
ENST00000287387
5
ENSE00001028350
chr8:
124448693-124448841
149
NTAQ1_HUMAN
79-128
50
1
A:79-128
50
1.6
ENST00000287387
6
ENSE00001090841
chr8:
124449450-124449574
125
NTAQ1_HUMAN
128-170
43
1
A:128-170
43
1.8f
ENST00000287387
8f
ENSE00001165886
chr8:
124453546-124454261
716
NTAQ1_HUMAN
170-205
36
1
A:170-202
33
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3c9qA00 (A:8-202)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
C8orf32 fold
(1)
Homologous Superfamily
:
C8orf32 like domain
(1)
Human (Homo sapiens)
(1)
1a
3c9qA00
A:8-202
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Variant
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Chain A
Chain L
Asymmetric Unit 1
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