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3C98
Asym. Unit
Info
Asym.Unit (279 KB)
Biol.Unit 1 (273 KB)
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(1)
Title
:
REVISED STRUCTURE OF THE MUNC18A-SYNTAXIN1 COMPLEX
Authors
:
D. A. Hattendorf, K. M. Misura, P. Burkhardt, R. H. Scheller, D. Fasshauer, W. I. Weis
Date
:
15 Feb 08 (Deposition) - 25 Mar 08 (Release) - 19 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein Complex, Alternative Splicing, Cytoplasm, Membrane, Phosphoprotein, Protein Transport, Transport, Coiled Coil, Neurotransmitter Transport, Transmembrane, Endocytosis/Exocytosis Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Burkhardt, D. A. Hattendorf, W. I. Weis, D. Fasshauer
Munc18A Controls Snare Assembly Through Its Interaction With The Syntaxin N-Peptide
Embo J. V. 27 923 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Sorry, no Info available
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (B:192-248)
2: SYNTAXIN (B:198-237)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
STX1A_RAT
192-254
1
B:192-248
2
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
1
B:198-237
[
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Exons
(28, 28)
Info
All Exons
Exon 1.1 (A:4-13)
Exon 1.2 (A:13-29)
Exon 1.3 (A:30-57)
Exon 1.4 (A:57-82)
Exon 1.5 (A:83-109)
Exon 1.6 (A:109-143)
Exon 1.7 (A:144-193)
Exon 1.8 (A:193-221)
Exon 1.9 (A:222-265)
Exon 1.10 (A:265-301)
Exon 1.11 (A:301-316)
Exon 1.12 (A:324-343)
Exon 1.13 (A:344-370)
Exon 1.14 (A:371-417)
Exon 1.15 (A:417-453)
Exon 1.16 (A:454-487)
Exon 1.17 (A:488-505)
Exon 1.18 (A:532-568)
Exon 1.20 (A:568-592)
Exon 2.1 (B:2-9)
Exon 2.2 (B:27-36)
Exon 2.3 (B:37-70)
Exon 2.4 (B:70-95)
Exon 2.5 (B:95-119)
Exon 2.6 (B:120-156)
Exon 2.7 (B:156-180)
Exon 2.8 (B:181-226)
Exon 2.9 (B:227-248)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/1.14
15: Boundary 1.14/1.15
16: Boundary 1.15/1.16
17: Boundary 1.16/1.17
18: Boundary 1.17/1.18
19: Boundary 1.18/1.20
20: Boundary 1.20/-
21: Boundary -/2.1
22: Boundary 2.1/2.2
23: Boundary 2.2/2.3
24: Boundary 2.3/2.4
25: Boundary 2.4/2.5
26: Boundary 2.5/2.6
27: Boundary 2.6/2.7
28: Boundary 2.7/2.8
29: Boundary 2.8/2.9
30: Boundary 2.9/2.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000021178
1
ENSRNOE00000233766
chr3:
11825531-11825389
143
STXB1_RAT
1-13
13
1
A:4-13
10
1.2
ENSRNOT00000021178
2
ENSRNOE00000233191
chr3:
11800380-11800331
50
STXB1_RAT
13-29
17
1
A:13-29
17
1.3
ENSRNOT00000021178
3
ENSRNOE00000233184
chr3:
11798700-11798619
82
STXB1_RAT
30-57
28
1
A:30-57
28
1.4
ENSRNOT00000021178
4
ENSRNOE00000233175
chr3:
11796614-11796538
77
STXB1_RAT
57-82
26
1
A:57-82
26
1.5
ENSRNOT00000021178
5
ENSRNOE00000233165
chr3:
11795441-11795363
79
STXB1_RAT
83-109
27
1
A:83-109
27
1.6
ENSRNOT00000021178
6
ENSRNOE00000233156
chr3:
11793538-11793435
104
STXB1_RAT
109-143
35
1
A:109-143
35
1.7
ENSRNOT00000021178
7
ENSRNOE00000233144
chr3:
11789425-11789277
149
STXB1_RAT
144-193
50
1
A:144-193
50
1.8
ENSRNOT00000021178
8
ENSRNOE00000233135
chr3:
11784771-11784687
85
STXB1_RAT
193-221
29
1
A:193-221
29
1.9
ENSRNOT00000021178
9
ENSRNOE00000233125
chr3:
11783906-11783776
131
STXB1_RAT
222-265
44
1
A:222-265
44
1.10
ENSRNOT00000021178
10
ENSRNOE00000233119
chr3:
11781329-11781222
108
STXB1_RAT
265-301
37
1
A:265-301
37
1.11
ENSRNOT00000021178
11
ENSRNOE00000233108
chr3:
11780186-11780126
61
STXB1_RAT
301-321
21
1
A:301-316
16
1.12
ENSRNOT00000021178
12
ENSRNOE00000147910
chr3:
11779159-11779094
66
STXB1_RAT
322-343
22
1
A:324-343
20
1.13
ENSRNOT00000021178
13
ENSRNOE00000147959
chr3:
11778568-11778488
81
STXB1_RAT
344-370
27
1
A:344-370
27
1.14
ENSRNOT00000021178
14
ENSRNOE00000233100
chr3:
11775846-11775708
139
STXB1_RAT
371-417
47
1
A:371-417
47
1.15
ENSRNOT00000021178
15
ENSRNOE00000233091
chr3:
11774773-11774664
110
STXB1_RAT
417-453
37
1
A:417-453
37
1.16
ENSRNOT00000021178
16
ENSRNOE00000148118
chr3:
11774192-11774091
102
STXB1_RAT
454-487
34
1
A:454-487
34
1.17
ENSRNOT00000021178
17
ENSRNOE00000233086
chr3:
11771600-11771515
86
STXB1_RAT
488-516
29
1
A:488-505
18
1.18
ENSRNOT00000021178
18
ENSRNOE00000233078
chr3:
11770018-11769864
155
STXB1_RAT
516-568
53
1
A:532-568
37
1.20
ENSRNOT00000021178
20
ENSRNOE00000151005
chr3:
11763796-11762106
1691
STXB1_RAT
568-594
27
1
A:568-592
25
2.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
1
B:2-9
8
2.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
1
B:27-36
10
2.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
1
B:37-70
34
2.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
1
B:70-95
26
2.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
1
B:95-119
25
2.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
1
B:120-156
37
2.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
1
B:156-180
25
2.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
1
B:181-226
46
2.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
1
B:227-248
22
2.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3c98b_ (B:)
2a: SCOP_d3c98a_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
STAT-like
(26)
Superfamily
:
t-snare proteins
(10)
Family
:
t-snare proteins
(10)
Protein domain
:
Syntaxin 1A N-terminal domain
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d3c98b_
B:
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Sec1/munc18-like (SM) proteins
(6)
Superfamily
:
Sec1/munc18-like (SM) proteins
(6)
Family
:
Sec1/munc18-like (SM) proteins
(6)
Protein domain
:
Neuronal Sec1, NSec1
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
2a
d3c98a_
A:
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_3c98A02 (A:135-245,A:480-592)
2a: CATH_3c98A01 (A:4-132)
3a: CATH_3c98A04 (A:360-479)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1910, no name defined]
(6)
Norway rat (Rattus norvegicus)
(1)
1a
3c98A02
A:135-245,A:480-592
Homologous Superfamily
:
[code=3.40.50.2060, no name defined]
(7)
Norway rat (Rattus norvegicus)
(2)
2a
3c98A01
A:4-132
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.60, no name defined]
(6)
Norway rat (Rattus norvegicus)
(1)
3a
3c98A04
A:360-479
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Pfam Domains
(0, 0)
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