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3C7I
Biol. Unit 1
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Asym.Unit (25 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE GRB2-SH2 DOMAIN AND A FLEXIBLE LIGAND, FPTVN.
Authors
:
A. P. Benfield, S. F. Martin
Date
:
07 Feb 08 (Deposition) - 12 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Flexible, Constrained, Entropy, Grb2-Sh2, Ligand Preorganization, Alternative Splicing, Host-Virus Interaction, Phosphoprotein, Sh2 Domain, Sh3 Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. Benfield, M. G. Teresk, H. R. Plake, J. E. Delorbe, L. E. Millspaugh, S. F. Martin
Ligand Preorganization May Be Accompanied By Entropic Penalties In Protein-Ligand Interactions.
Angew. Chem. Int. Ed. Engl. V. 118 6984 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
2a: N-{(2R)-4-(METHYLAMINO)-4-OXO-2-[4... (TVNa)
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No.
Name
Count
Type
Full Name
1
FMT
2
Ligand/Ion
FORMIC ACID
2
TVN
2
Ligand/Ion
N-{(2R)-4-(METHYLAMINO)-4-OXO-2-[4-(PHOSPHONOOXY)BENZYL]BUTANOYL}-L-VALYL-L-ASPARTAMIDE
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Sites
(2, 2)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:67 , ARG A:78 , ARG A:86 , SER A:88 , SER A:90 , SER A:96 , HIS A:107 , PHE A:108 , LYS A:109 , LEU A:120 , TRP A:121 , GLU A:152 , PRO A:155 , HOH A:214 , HOH A:239 , HOH A:240 , HOH A:272 , HOH A:313
BINDING SITE FOR RESIDUE TVN A 202
2
AC2
SOFTWARE
GLN A:77 , ARG A:78 , HIS A:79 , LYS A:109 , GLU A:152 , HOH A:206 , HOH A:237
BINDING SITE FOR RESIDUE FMT A 201
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
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1: SH2 (A:60-152)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
GRB2_HUMAN
60-152
2
A:60-152
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
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1a: SCOP_d3c7ia_ (A:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Growth factor receptor-bound protein 2 (GRB2)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3c7ia_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_3c7iA00 (A:55-155)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
3c7iA00
A:55-155
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (25 KB)
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