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3C6Z
Biol. Unit 1
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Asym.Unit (164 KB)
Biol.Unit 1 (317 KB)
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(1)
Title
:
HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION
Authors
:
A. Schmidt
Date
:
06 Feb 08 (Deposition) - 03 Jun 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Atomic Resolution, Hydroxynitril Lyase, Catalysis, Protonation State, Ab Initio Calculations, Substrate Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Schmidt, K. Gruber, C. Kratky, V. S. Lamzin
Atomic Resolution Crystal Structures And Quantum Chemistry Meet To Reveal Subtleties Of Hydroxynitrile Lyase Catalysis
J. Biol. Chem. V. 283 21827 2008
(for further references see the
PDB file header
)
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: ISOPROPYL ALCOHOL (IPAa)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
3
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:23 , LYS A:170 , HOH A:3029 , HOH A:3044 , HOH A:3128 , HOH A:3152 , HOH A:3264 , HOH A:3437 , HOH A:3686
BINDING SITE FOR RESIDUE SO4 A 2001
2
AC2
SOFTWARE
THR A:137 , LYS A:138 , ASP A:139 , GLY A:140 , GLY A:232 , GLY A:233 , LYS A:241 , HOH A:3225 , HOH A:3237 , HOH A:3369 , HOH A:3370 , HOH A:3379
BINDING SITE FOR RESIDUE SO4 A 2002
3
AC3
SOFTWARE
THR A:110 , GLY A:195 , TYR A:222 , HOH A:3230 , HOH A:3529 , HOH A:3637
BINDING SITE FOR RESIDUE SO4 A 2003
4
AC4
SOFTWARE
LYS A:141 , ASN A:181 , LYS A:185 , HOH A:3103 , HOH A:3124 , HOH A:3134 , HOH A:3450
BINDING SITE FOR RESIDUE SO4 A 2004
5
AC5
SOFTWARE
CYS A:94 , GLU A:95 , GLU A:192 , HOH A:3399 , HOH A:3436
BINDING SITE FOR RESIDUE BME A 2005
6
AC6
SOFTWARE
THR A:11 , SER A:80 , LEU A:148 , HOH A:3065
BINDING SITE FOR RESIDUE IPA A 1001
7
AC7
SOFTWARE
GLN A:47 , LYS A:147 , ARG A:174 , LYS A:175 , HOH A:3120 , HOH A:3272 , HOH A:3453
BINDING SITE FOR RESIDUE PEG A 1501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3c6za_ (A:)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Hydroxynitrile lyase-like
(34)
Protein domain
:
Hydroxynitrile lyase
(28)
Rubber tree (Hevea brasiliensis) [TaxId: 3981]
(19)
1a
d3c6za_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3c6zA00 (A:2-257)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Para rubber tree (Hevea brasiliensis)
(5)
1a
3c6zA00
A:2-257
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Pfam Domains
(0, 0)
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Chain A
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Asym.Unit (164 KB)
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