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3C66
Biol. Unit 1
Info
Asym.Unit (191 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (93 KB)
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(1)
Title
:
YEAST POLY(A) POLYMERASE IN COMPLEX WITH FIP1 RESIDUES 80-105
Authors
:
A. Bohm, G. Meinke
Date
:
02 Feb 08 (Deposition) - 20 May 08 (Release) - 25 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Peptide-Protein Complex, Mrna Processing, Nucleus, Rna-Binding, Transferase, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Meinke, C. Ezeokonkwo, P. Balbo, W. Stafford, C. Moore, A. Bohm
Structure Of Yeast Poly(A) Polymerase In Complex With A Peptide From Fip1, An Intrinsically Disordered Protein.
Biochemistry V. 47 6859 2008
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
2c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:9 , THR A:10 , ARG A:242 , TRP A:266
BINDING SITE FOR RESIDUE MES A 538
2
AC4
SOFTWARE
SER A:14 , VAL A:16 , ALA A:250 , ARG A:258
BINDING SITE FOR RESIDUE GOL A 539
3
AC5
SOFTWARE
GLN A:60 , ARG A:78 , GLY A:81 , GLY A:82 , VAL A:165 , PRO A:166 , LEU A:167
BINDING SITE FOR RESIDUE GOL A 540
4
AC6
SOFTWARE
ASP A:79 , GLN A:164 , GOL B:542
BINDING SITE FOR RESIDUE GOL A 541
5
AC7
SOFTWARE
ARG A:208 , ILE A:209
BINDING SITE FOR RESIDUE GOL A 542
6
AC8
SOFTWARE
GLY A:232 , GLY A:233 , VAL A:234 , ALA A:235 , ALA A:312
BINDING SITE FOR RESIDUE GOL A 543
7
BC2
SOFTWARE
GOL A:541 , GLN B:162 , PRO B:163 , GLN B:164 , PRO B:166 , LEU B:169
BINDING SITE FOR RESIDUE GOL B 542
8
BC3
SOFTWARE
LYS A:342 , SER B:14 , VAL B:16 , GLU B:22 , TYR B:247 , ALA B:250
BINDING SITE FOR RESIDUE GOL B 543
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3c66a1 (A:202-351)
1b: SCOP_d3c66b1 (B:202-351)
2a: SCOP_d3c66a3 (A:352-532)
2b: SCOP_d3c66b3 (B:352-531)
3a: SCOP_d3c66a2 (A:3-201)
3b: SCOP_d3c66b2 (B:3-201)
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Classes
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)
(
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Folds
(
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
PAP/OAS1 substrate-binding domain
(46)
Superfamily
:
PAP/OAS1 substrate-binding domain
(46)
Family
:
Poly(A) polymerase, PAP, middle domain
(8)
Protein domain
:
Poly(A) polymerase, PAP, middle domain
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
1a
d3c66a1
A:202-351
1b
d3c66b1
B:202-351
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
PAP/Archaeal CCA-adding enzyme, C-terminal domain
(37)
Family
:
Poly(A) polymerase, PAP, C-terminal domain
(8)
Protein domain
:
Poly(A) polymerase, PAP, C-terminal domain
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
2a
d3c66a3
A:352-532
2b
d3c66b3
B:352-531
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
Poly(A) polymerase, PAP, N-terminal domain
(8)
Protein domain
:
Poly(A) polymerase, PAP, N-terminal domain
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
3a
d3c66a2
A:3-201
3b
d3c66b2
B:3-201
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_3c66A03 (A:353-522)
1b: CATH_3c66B03 (B:353-522)
2a: CATH_3c66A02 (A:40-195)
2b: CATH_3c66B02 (B:40-195)
3a: CATH_3c66A01 (A:3-39,A:196-352)
3b: CATH_3c66B01 (B:3-39,B:196-352)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.590, no name defined]
(8)
Baker's yeast (Saccharomyces cerevisiae)
(4)
1a
3c66A03
A:353-522
1b
3c66B03
B:353-522
Topology
:
Beta Polymerase; domain 2
(187)
Homologous Superfamily
:
Beta Polymerase, domain 2
(183)
Baker's yeast (Saccharomyces cerevisiae)
(4)
2a
3c66A02
A:40-195
2b
3c66B02
B:40-195
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Poly(a)-polymerase, middle domain
(9)
Homologous Superfamily
:
[code=1.10.1410.10, no name defined]
(8)
Baker's yeast (Saccharomyces cerevisiae)
(4)
3a
3c66A01
A:3-39,A:196-352
3b
3c66B01
B:3-39,B:196-352
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (191 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
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