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3C5N
Asym. Unit
Info
Asym.Unit (239 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (117 KB)
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(1)
Title
:
STRUCTURE OF HUMAN TULP1 IN COMPLEX WITH IP3
Authors
:
R. D. Busam, L. Lehtio, C. H. Arrowsmith, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, M. D. Herman, A. Johansson, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, M. Moche, M. E. Nilsson, P. Nordlund, T. Nyman, C. Persson, J. Sagemark, L. Svensson, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Welin, H. Berglund, Structural Genomics Consortium (Sgc)
Date
:
31 Jan 08 (Deposition) - 01 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tubby, Inositol, Signalling, Alternative Splicing, Disease Mutation, Polymorphism, Retinitis Pigmentosa, Sensory Transduction, Vision, Signaling Protein, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. D. Busam, L. Lehtio, C. H. Arrowsmith, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, M. D. Herman, A. Johansson, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, M. Moche, M. E. Nilsson, P. Nordlund, T. Nyman, C. Persson, J. Sagemark, L. Svensson, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Welin, H. Berglund, Structural Genomics Consortium (Sgc)
Structure Of Human Tulp1 In Complex With Ip3
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE (I3Pa)
1b: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE (I3Pb)
1c: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE (I3Pc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
I3P
3
Ligand/Ion
D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:258 , SER B:434 , LYS B:436 , ARG B:455
BINDING SITE FOR RESIDUE I3P B 1
2
AC2
SOFTWARE
ARG A:258 , SER A:434 , LYS A:436 , ARG A:455 , LYS B:290
BINDING SITE FOR RESIDUE I3P A 2
3
AC3
SOFTWARE
ARG B:289 , SER B:292 , LYS B:293 , THR B:294 , LYS B:316 , ARG B:318 , ASN B:334 , ARG B:337 , ARG B:347
BINDING SITE FOR RESIDUE I3P B 3
[
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SAPs(SNPs)/Variants
(11, 22)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_065500 (G315W, chain A/B, )
02: VAR_008278 (R325H, chain A/B, )
03: VAR_037584 (F329S, chain A/B, )
04: VAR_065501 (R347W, chain A/B, )
05: VAR_007941 (R367P, chain A/B, )
06: VAR_008279 (T401M, chain A/B, )
07: VAR_007942 (I406K, chain A/B, )
08: VAR_065502 (R429W, chain A/B, )
09: VAR_008280 (K436R, chain A/B, )
10: VAR_007943 (F438L, chain A/B, )
11: VAR_008281 (A443T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065500
G
368
W
TULP1_HUMAN
Disease (LCA15)
---
A/B
G
315
W
02
UniProt
VAR_008278
R
378
H
TULP1_HUMAN
Disease (RP14)
---
A/B
R
325
H
03
UniProt
VAR_037584
F
382
S
TULP1_HUMAN
Disease (RP14)
---
A/B
F
329
S
04
UniProt
VAR_065501
R
400
W
TULP1_HUMAN
Disease (LCA15)
---
A/B
R
347
W
05
UniProt
VAR_007941
R
420
P
TULP1_HUMAN
Disease (RP14)
---
A/B
R
367
P
06
UniProt
VAR_008279
T
454
M
TULP1_HUMAN
Disease (RP14)
138200747
A/B
T
401
M
07
UniProt
VAR_007942
I
459
K
TULP1_HUMAN
Disease (RP14)
121909075
A/B
I
406
K
08
UniProt
VAR_065502
R
482
W
TULP1_HUMAN
Disease (RP14)
---
A/B
R
429
W
09
UniProt
VAR_008280
K
489
R
TULP1_HUMAN
Disease (RP14)
---
A/B
K
436
R
10
UniProt
VAR_007943
F
491
L
TULP1_HUMAN
Disease (RP14)
---
A/B
F
438
L
11
UniProt
VAR_008281
A
496
T
TULP1_HUMAN
Unclassified
141980901
A/B
A
443
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TUB_1 (A:426-439,B:426-439)
2: TUB_2 (A:474-483,B:474-483)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUB_1
PS01200
Tub family signature 1.
TULP1_HUMAN
479-492
2
A:426-439
B:426-439
2
TUB_2
PS01201
Tub family signature 2.
TULP1_HUMAN
527-542
2
A:474-483
B:474-483
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.10a (A:238-280 (gaps) | B:238-280 (gaps...)
Exon 1.11 (A:281-318 (gaps) | B:281-318 (gaps...)
Exon 1.12c (A:318-355 | B:318-355)
Exon 1.13a (A:356-388 (gaps) | B:356-388)
Exon 1.14b (A:389-446 | B:389-446 (gaps))
Exon 1.15 (A:446-483 | B:446-483)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9/1.10a
2: Boundary 1.10a/1.11
3: Boundary 1.11/1.12c
4: Boundary 1.12c/1.13a
5: Boundary 1.13a/1.14b
6: Boundary 1.14b/1.15
7: Boundary 1.15/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000229771
1a
ENSE00001785737
chr6:
35480715-35480589
127
TULP1_HUMAN
1-16
16
0
-
-
1.2
ENST00000229771
2
ENSE00000849647
chr6:
35480467-35480416
52
TULP1_HUMAN
16-33
18
0
-
-
1.3b
ENST00000229771
3b
ENSE00000747243
chr6:
35480047-35479957
91
TULP1_HUMAN
34-64
31
0
-
-
1.4b
ENST00000229771
4b
ENSE00002193268
chr6:
35479583-35479425
159
TULP1_HUMAN
64-117
54
0
-
-
1.5b
ENST00000229771
5b
ENSE00000747197
chr6:
35478787-35478638
150
TULP1_HUMAN
117-167
51
0
-
-
1.6
ENST00000229771
6
ENSE00000747173
chr6:
35477705-35477604
102
TULP1_HUMAN
167-201
35
0
-
-
1.7b
ENST00000229771
7b
ENSE00001885820
chr6:
35477527-35477411
117
TULP1_HUMAN
201-240
40
0
-
-
1.8
ENST00000229771
8
ENSE00002201320
chr6:
35477089-35476986
104
TULP1_HUMAN
240-274
35
0
-
-
1.9
ENST00000229771
9
ENSE00002178632
chr6:
35474056-35474051
6
TULP1_HUMAN
275-276
2
0
-
-
1.10a
ENST00000229771
10a
ENSE00002159055
chr6:
35473950-35473780
171
TULP1_HUMAN
277-333
57
2
A:238-280 (gaps)
B:238-280 (gaps)
43
43
1.11
ENST00000229771
11
ENSE00002190679
chr6:
35473630-35473518
113
TULP1_HUMAN
334-371
38
2
A:281-318 (gaps)
B:281-318 (gaps)
38
38
1.12c
ENST00000229771
12c
ENSE00002194921
chr6:
35471625-35471514
112
TULP1_HUMAN
371-408
38
2
A:318-355
B:318-355
38
38
1.13a
ENST00000229771
13a
ENSE00002179188
chr6:
35471434-35471336
99
TULP1_HUMAN
409-441
33
2
A:356-388 (gaps)
B:356-388
33
33
1.14b
ENST00000229771
14b
ENSE00000747135
chr6:
35467929-35467758
172
TULP1_HUMAN
442-499
58
2
A:389-446
B:389-446 (gaps)
58
58
1.15
ENST00000229771
15
ENSE00000849646
chr6:
35466237-35465651
587
TULP1_HUMAN
499-542
44
2
A:446-483
B:446-483
38
38
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3c5na_ (A:)
1b: SCOP_d3c5nb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Tubby C-terminal domain-like
(7)
Superfamily
:
Tubby C-terminal domain-like
(7)
Family
:
Transcriptional factor tubby, C-terminal domain
(5)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3c5na_
A:
1b
d3c5nb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3c5nA00 (A:238-483)
1b: CATH_3c5nB00 (B:238-483)
View:
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Label:
Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
Tubby Protein; Chain A
(5)
Homologous Superfamily
:
Tubby Protein; Chain A
(5)
Human (Homo sapiens)
(3)
1a
3c5nA00
A:238-483
1b
3c5nB00
B:238-483
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Nucleic
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Asym.Unit (239 KB)
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