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3C50
Asym. Unit
Info
Asym.Unit (176 KB)
Biol.Unit 1 (169 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF G PROTEIN COUPLED RECEPTOR KINASE 1 BOUND TO ADP AND MAGNESIUM CHLORIDE AT 2.6A
Authors
:
P. Singh, J. J. G. Tesmer
Date
:
30 Jan 08 (Deposition) - 11 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ser/Thr Kinase, Rgs Homology Domain, G Protein Coupled Receptor Kinase, Grk, Grk1, Rhodopsin Kinase, P-Loop, Autophosphorylation, Adp, Atp-Binding, Lipoprotein, Membrane, Methylation, Nucleotide- Binding, Phosphoprotein, Prenylation, Serine/Threonine-Protein Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. Singh, B. Wang, T. Maeda, K. Palczewski, J. J. Tesmer
Structures Of Rhodopsin Kinase In Different Ligand States Reveal Key Elements Involved In G Protein-Coupled Receptor Kinase Activation.
J. Biol. Chem. V. 283 14053 2008
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
8
Ligand/Ion
CHLORIDE ION
3
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
MG
4
Ligand/Ion
MAGNESIUM ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:332
BINDING SITE FOR RESIDUE MG A 563
02
AC2
SOFTWARE
ASP A:332
BINDING SITE FOR RESIDUE MG A 564
03
AC3
SOFTWARE
LEU A:166 , ARG B:170 , GLN B:173
BINDING SITE FOR RESIDUE CL B 565
04
AC4
SOFTWARE
GLY A:387 , PHE A:389 , ARG A:390
BINDING SITE FOR RESIDUE CL A 566
05
AC5
SOFTWARE
PHE A:143 , PRO A:145 , LEU A:146
BINDING SITE FOR RESIDUE CL A 567
06
AC6
SOFTWARE
GLY A:137 , ALA A:138 , GLY A:139 , LYS A:340
BINDING SITE FOR RESIDUE CL A 569
07
AC7
SOFTWARE
ASP B:332
BINDING SITE FOR RESIDUE MG B 563
08
AC8
SOFTWARE
ASP B:332
BINDING SITE FOR RESIDUE MG B 564
09
AC9
SOFTWARE
GLN A:173 , LEU B:166
BINDING SITE FOR RESIDUE CL B 566
10
BC1
SOFTWARE
GLY B:387 , PHE B:389 , ARG B:390
BINDING SITE FOR RESIDUE CL B 567
11
BC2
SOFTWARE
ALA B:134 , PHE B:143 , PRO B:145 , LEU B:146
BINDING SITE FOR RESIDUE CL B 568
12
BC3
SOFTWARE
ARG B:390 , LYS B:395
BINDING SITE FOR RESIDUE CL B 569
13
BC4
SOFTWARE
LEU A:193 , GLY A:194 , ARG A:195 , GLY A:196 , GLY A:197 , ALA A:214 , LYS A:216 , THR A:265 , MET A:267 , LEU A:321 , ASP A:332
BINDING SITE FOR RESIDUE ADP A 562
14
BC5
SOFTWARE
LEU B:193 , GLY B:194 , ARG B:195 , GLY B:196 , GLY B:197 , ALA B:214 , LYS B:216 , MET B:264 , THR B:265 , MET B:267 , LEU B:321 , ASP B:332
BINDING SITE FOR RESIDUE ADP B 562
15
BC6
SOFTWARE
ASP A:127 , ALA A:128 , GLU A:129 , ARG A:313 , GLY A:348 , TYR A:349
BINDING SITE FOR RESIDUE MES A 570
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: RGS (A:63-172,B:63-172)
2: PROTEIN_KINASE_ATP (A:193-216,B:193-216)
3: PROTEIN_KINASE_ST (A:310-322,B:310-322)
4: AGC_KINASE_CTER (A:453-518,B:453-518)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
RK_BOVIN
63-172
2
A:63-172
B:63-172
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
RK_BOVIN
193-216
2
A:193-216
B:193-216
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
RK_BOVIN
310-322
2
A:310-322
B:310-322
4
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
RK_BOVIN
453-518
2
A:453-518
B:453-518
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:30-230 | B:30-230)
Exon 1.2 (A:231-252 | B:231-252)
Exon 1.6a (A:252-326 | B:252-326)
Exon 1.7 (A:326-354 | B:326-354)
Exon 1.8 (A:354-395 | B:354-395)
Exon 1.9 (A:396-463 | B:396-463)
Exon 1.10 (A:463-533 (gaps) | B:463-533 (gaps...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.6a
4: Boundary 1.6a/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000045068
1
ENSBTAE00000216442
chr12:
84918428-84919117
690
RK_BOVIN
1-230
230
2
A:30-230
B:30-230
201
201
1.2
ENSBTAT00000045068
2
ENSBTAE00000413180
chr12:
84920231-84920294
64
RK_BOVIN
231-252
22
2
A:231-252
B:231-252
22
22
1.6a
ENSBTAT00000045068
6a
ENSBTAE00000334122
chr12:
84924790-84925011
222
RK_BOVIN
252-326
75
2
A:252-326
B:252-326
75
75
1.7
ENSBTAT00000045068
7
ENSBTAE00000400759
chr12:
84925672-84925755
84
RK_BOVIN
326-354
29
2
A:326-354
B:326-354
29
29
1.8
ENSBTAT00000045068
8
ENSBTAE00000334116
chr12:
84936606-84936730
125
RK_BOVIN
354-395
42
2
A:354-395
B:354-395
42
42
1.9
ENSBTAT00000045068
9
ENSBTAE00000334112
chr12:
84938172-84938373
202
RK_BOVIN
396-463
68
2
A:396-463
B:396-463
68
68
1.10
ENSBTAT00000045068
10
ENSBTAE00000334107
chr12:
84939509-84939807
299
RK_BOVIN
463-561
99
2
A:463-533 (gaps)
B:463-533 (gaps)
71
71
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3c50A02 (A:180-270)
1b: CATH_3c50B02 (B:180-270)
2a: CATH_3c50B03 (B:271-472)
2b: CATH_3c50A03 (A:271-475)
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Classes
(
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(
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(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Cattle (Bos taurus)
(42)
1a
3c50A02
A:180-270
1b
3c50B02
B:180-270
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Cattle (Bos taurus)
(42)
2a
3c50B03
B:271-472
2b
3c50A03
A:271-475
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Chain A
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Asymmetric Unit 1
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