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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3C3O
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
ALIX BRO1-DOMAIN:CHMIP4A CO-CRYSTAL STRUCTURE
Authors
:
J. B. Mccullough, R. D. Fisher, F. G. Whitby, W. I. Sundquist, C. P. Hill
Date
:
28 Jan 08 (Deposition) - 10 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Chmp4A Alix Bro1 Amphipathic-Helix, Apoptosis, Host-Virus Interaction, Protein Transport, Transport, Cytoplasmic Vesicle, Lipid-Binding, Membrane, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Mccullough, R. D. Fisher, F. G. Whitby, W. I. Sundquist, C. P. Hill
Alix-Chmp4 Interactions In The Human Escrt Pathway.
Proc. Natl. Acad. Sci. Usa V. 105 7687 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:69 , LYS A:151 , PHE A:155
BINDING SITE FOR RESIDUE GOL A 360
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_068975 (V7M, chain A, )
2: VAR_053017 (A309T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068975
V
7
M
PDC6I_HUMAN
Polymorphism
11554560
A
V
7
M
2
UniProt
VAR_053017
A
309
T
PDC6I_HUMAN
Polymorphism
3792594
A
A
309
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BRO1 (A:3-358)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRO1
PS51180
BRO1 domain profile.
PDC6I_HUMAN
3-392
1
A:3-358
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Exons
(9, 9)
Info
All Exons
Exon 1.1b (A:2-70)
Exon 1.4 (A:70-88)
Exon 1.5b (A:89-112)
Exon 1.6c (A:112-154)
Exon 1.7d (A:155-206)
Exon 1.8b (A:206-239)
Exon 1.10c (A:240-278)
Exon 1.12b (A:279-353)
Exon 1.13b (A:353-358)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.4
03: Boundary 1.4/1.5b
04: Boundary 1.5b/1.6c
05: Boundary 1.6c/1.7d
06: Boundary 1.7d/1.8b
07: Boundary 1.8b/1.10c
08: Boundary 1.10c/1.12b
09: Boundary 1.12b/1.13b
10: Boundary 1.13b/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000307296
1b
ENSE00001884181
chr3:
33839844-33840429
586
PDC6I_HUMAN
1-70
70
1
A:2-70
69
1.4
ENST00000307296
4
ENSE00001770534
chr3:
33853564-33853618
55
PDC6I_HUMAN
70-88
19
1
A:70-88
19
1.5b
ENST00000307296
5b
ENSE00001632925
chr3:
33855051-33855120
70
PDC6I_HUMAN
89-112
24
1
A:89-112
24
1.6c
ENST00000307296
6c
ENSE00001802994
chr3:
33863447-33863574
128
PDC6I_HUMAN
112-154
43
1
A:112-154
43
1.7d
ENST00000307296
7d
ENSE00001141015
chr3:
33866679-33866832
154
PDC6I_HUMAN
155-206
52
1
A:155-206
52
1.8b
ENST00000307296
8b
ENSE00001141009
chr3:
33867972-33868072
101
PDC6I_HUMAN
206-239
34
1
A:206-239
34
1.10c
ENST00000307296
10c
ENSE00001141002
chr3:
33870345-33870461
117
PDC6I_HUMAN
240-278
39
1
A:240-278
39
1.12b
ENST00000307296
12b
ENSE00001608471
chr3:
33877536-33877758
223
PDC6I_HUMAN
279-353
75
1
A:279-353
75
1.13b
ENST00000307296
13b
ENSE00001630102
chr3:
33879696-33879819
124
PDC6I_HUMAN
353-394
42
1
A:353-358
6
1.14
ENST00000307296
14
ENSE00001140976
chr3:
33883389-33883566
178
PDC6I_HUMAN
394-453
60
0
-
-
1.15b
ENST00000307296
15b
ENSE00001785905
chr3:
33885604-33885715
112
PDC6I_HUMAN
454-491
38
0
-
-
1.16
ENST00000307296
16
ENSE00001732288
chr3:
33886911-33887080
170
PDC6I_HUMAN
491-547
57
0
-
-
1.18a
ENST00000307296
18a
ENSE00001783635
chr3:
33893980-33894228
249
PDC6I_HUMAN
548-630
83
0
-
-
1.19b
ENST00000307296
19b
ENSE00001596979
chr3:
33895371-33895505
135
PDC6I_HUMAN
631-675
45
0
-
-
1.20b
ENST00000307296
20b
ENSE00001097440
chr3:
33896658-33896752
95
PDC6I_HUMAN
676-707
32
0
-
-
1.21c
ENST00000307296
21c
ENSE00001140939
chr3:
33905498-33905621
124
PDC6I_HUMAN
707-748
42
0
-
-
1.22b
ENST00000307296
22b
ENSE00001140934
chr3:
33906735-33906922
188
PDC6I_HUMAN
749-811
63
0
-
-
1.23b
ENST00000307296
23b
ENSE00001218677
chr3:
33907843-33911194
3352
PDC6I_HUMAN
811-868
58
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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