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Getting 'Biological Unit' information from database.
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3C3N
Asym. Unit
Info
Asym.Unit (214 KB)
Biol.Unit 1 (208 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIHYDROOROTATE DEHYDROGENASE FROM TRYPANOSOMA CRUZI STRAIN Y
Authors
:
M. P. Pinheiro, J. Iulek, M. C. Nonato
Date
:
28 Jan 08 (Deposition) - 29 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dhodh, Trypanosoma Cruzi Strain Y, Dihydroorotate Dehydrogenase, Pyrd, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. P. Pinheiro, J. Iulek, M. Cristina Nonato
Crystal Structure Of Trypanosoma Cruzi Dihydroorotate Dehydrogenase From Y Strain
Biochem. Biophys. Res. Commun. V. 369 812 2008
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
1d: FLAVIN MONONUCLEOTIDE (FMNd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
4
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
GOL
5
Ligand/Ion
GLYCEROL
3
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:45 , ASN A:69 , MET A:71 , GLY A:72 , LEU A:73 , PRO A:74 , CYS A:132 , ASN A:134 , FMN A:315 , HOH A:335 , HOH A:406
BINDING SITE FOR RESIDUE SO4 A 600
02
AC2
SOFTWARE
LYS B:45 , ASN B:69 , MET B:71 , GLY B:72 , LEU B:73 , PRO B:74 , CYS B:132 , ASN B:134 , FMN B:315 , HOH B:349 , HOH B:402
BINDING SITE FOR RESIDUE SO4 B 600
03
AC3
SOFTWARE
LYS C:45 , ASN C:69 , MET C:71 , GLY C:72 , LEU C:73 , PRO C:74 , CYS C:132 , ASN C:134 , FMN C:316 , HOH C:357 , HOH C:405
BINDING SITE FOR RESIDUE SO4 C 600
04
AC4
SOFTWARE
LYS D:45 , ASN D:69 , MET D:71 , GLY D:72 , LEU D:73 , PRO D:74 , CYS D:132 , ASN D:134 , FMN D:316 , HOH D:377 , HOH D:426
BINDING SITE FOR RESIDUE SO4 D 600
05
AC5
SOFTWARE
ALA A:20 , ALA A:21 , GLY A:22 , LYS A:45 , SER A:46 , TYR A:60 , ASN A:69 , MET A:71 , ASN A:129 , LYS A:166 , VAL A:195 , ASN A:196 , SER A:197 , GLY A:223 , GLY A:224 , ILE A:227 , CYS A:250 , GLY A:251 , GLY A:252 , GLY A:273 , THR A:274 , HOH A:387 , HOH A:394 , HOH A:510 , SO4 A:600
BINDING SITE FOR RESIDUE FMN A 315
06
AC6
SOFTWARE
ALA B:20 , ALA B:21 , GLY B:22 , LYS B:45 , SER B:46 , TYR B:60 , ASN B:69 , ASN B:129 , LYS B:166 , VAL B:195 , ASN B:196 , SER B:197 , GLY B:224 , ILE B:227 , CYS B:250 , GLY B:251 , GLY B:252 , GLY B:273 , THR B:274 , HOH B:389 , HOH B:431 , HOH B:498 , HOH B:507 , SO4 B:600
BINDING SITE FOR RESIDUE FMN B 315
07
AC7
SOFTWARE
ALA C:20 , ALA C:21 , GLY C:22 , LYS C:45 , SER C:46 , TYR C:60 , ASN C:69 , MET C:71 , ASN C:129 , LYS C:166 , VAL C:195 , ASN C:196 , SER C:197 , GLY C:223 , GLY C:224 , ILE C:227 , CYS C:250 , GLY C:251 , GLY C:252 , GLY C:273 , THR C:274 , HOH C:394 , HOH C:428 , HOH C:460 , HOH C:484 , SO4 C:600
BINDING SITE FOR RESIDUE FMN C 316
08
AC8
SOFTWARE
ALA D:20 , ALA D:21 , GLY D:22 , LYS D:45 , SER D:46 , ASN D:69 , MET D:71 , ASN D:129 , LYS D:166 , VAL D:195 , ASN D:196 , SER D:197 , GLY D:223 , GLY D:224 , ILE D:227 , CYS D:250 , GLY D:251 , GLY D:252 , GLY D:273 , THR D:274 , HOH D:358 , HOH D:414 , HOH D:447 , HOH D:475 , SO4 D:600
BINDING SITE FOR RESIDUE FMN D 316
09
AC9
SOFTWARE
LYS A:216 , GLN A:217 , PHE A:219 , HOH A:334 , HOH A:373 , ILE D:173 , ALA D:237 , ARG D:241
BINDING SITE FOR RESIDUE GOL A 316
10
BC1
SOFTWARE
TYR A:170 , PHE A:171 , HIS A:175 , PHE D:171 , HIS D:175
BINDING SITE FOR RESIDUE GOL A 317
11
BC2
SOFTWARE
TYR B:170 , PHE B:171 , HIS B:175 , HOH B:478 , PHE C:171 , HIS C:175
BINDING SITE FOR RESIDUE GOL B 316
12
BC3
SOFTWARE
LYS B:216 , GLN B:217 , PHE B:219 , ILE C:173 , ARG C:241 , HOH C:456
BINDING SITE FOR RESIDUE GOL C 2
13
BC4
SOFTWARE
GLU D:257 , HOH D:351
BINDING SITE FOR RESIDUE GOL D 317
[
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SAPs(SNPs)/Variants
(7, 28)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PYRD_TRYCC_002 (C3R, chain A/B/C/D, )
2: VAR_PYRD_TRYCC_003 (V63V, chain A/B/C/D, )
3: VAR_PYRD_TRYCC_004 (S86I, chain A/B/C/D, )
4: VAR_PYRD_TRYCC_005 (L98V, chain A/B/C/D, )
5: VAR_PYRD_TRYCC_006 (L222I, chain A/B/C/D, )
6: VAR_PYRD_TRYCC_007 (T285R, chain A/B/C/D, )
7: VAR_PYRD_TRYCC_008 (R301K, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PYRD_TRYCC_002
*
C
3
R
PYRD_TRYCC
---
---
A/B/C/D
C
3
R
2
UniProt
VAR_PYRD_TRYCC_003
*
F
63
V
PYRD_TRYCC
---
---
A/B/C/D
V
63
V
3
UniProt
VAR_PYRD_TRYCC_004
*
S
86
I
PYRD_TRYCC
---
---
A/B/C/D
S
86
I
4
UniProt
VAR_PYRD_TRYCC_005
*
L
98
V
PYRD_TRYCC
---
---
A/B/C/D
L
98
V
5
UniProt
VAR_PYRD_TRYCC_006
*
L
222
I
PYRD_TRYCC
---
---
A/B/C/D
L
222
I
6
UniProt
VAR_PYRD_TRYCC_007
*
T
285
R
PYRD_TRYCC
---
---
A/B/C/D
T
285
R
7
UniProt
VAR_PYRD_TRYCC_008
*
R
301
K
PYRD_TRYCC
---
---
A/B/C/D
R
301
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3c3na_ (A:)
1b: SCOP_d3c3nb_ (B:)
1c: SCOP_d3c3nc_ (C:)
1d: SCOP_d3c3nd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
automated matches
(40)
Trypanosoma cruzi [TaxId: 5693]
(7)
1a
d3c3na_
A:
1b
d3c3nb_
B:
1c
d3c3nc_
C:
1d
d3c3nd_
D:
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3c3nA01 (A:3-54,A:73-197,A:224-313)
1b: CATH_3c3nB01 (B:3-54,B:73-197,B:224-313)
1c: CATH_3c3nC01 (C:3-54,C:73-197,C:224-313)
1d: CATH_3c3nD01 (D:3-54,D:73-197,D:224-313)
2a: CATH_3c3nA02 (A:55-72,A:198-223)
2b: CATH_3c3nB02 (B:55-72,B:198-223)
2c: CATH_3c3nC02 (C:55-72,C:198-223)
2d: CATH_3c3nD02 (D:55-72,D:198-223)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Trypanosoma cruzi. Organism_taxid: 5693. Strain: y.
(1)
1a
3c3nA01
A:3-54,A:73-197,A:224-313
1b
3c3nB01
B:3-54,B:73-197,B:224-313
1c
3c3nC01
C:3-54,C:73-197,C:224-313
1d
3c3nD01
D:3-54,D:73-197,D:224-313
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Dihydroorotate Dehydrogenase A; chain A, domain 2
(22)
Homologous Superfamily
:
Dihydroorotate Dehydrogenase A, chain A, domain 2
(22)
Trypanosoma cruzi. Organism_taxid: 5693. Strain: y.
(1)
2a
3c3nA02
A:55-72,A:198-223
2b
3c3nB02
B:55-72,B:198-223
2c
3c3nC02
C:55-72,C:198-223
2d
3c3nD02
D:55-72,D:198-223
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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