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3C3D
Biol. Unit 2
Info
Asym.Unit (213 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 2-PHOSPHO-(S)-LACTATE TRANSFERASE FROM METHANOSARCINA MAZEI IN COMPLEX WITH FO AND PHOSPHATE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MAR46
Authors
:
F. Forouhar, M. Abashidze, H. Xu, L. L. Grochowski, J. Seetharaman, M. Hussain, A. P. Kuzin, Y. Chen, W. Zhou, R. Xiao, T. B. Acton, G. T. Montelione, A. Galinier, R. H. White, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date
:
28 Jan 08 (Deposition) - 19 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Magnesium, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Forouhar, M. Abashidze, H. Xu, L. L. Grochowski, J. Seetharaman, M. Hussain, A. Kuzin, Y. Chen, W. Zhou, R. Xiao, T. B. Acton, G. T. Montelione, A. Galinier, R. H. White, L. Tong
Molecular Insights Into The Biosynthesis Of The F420 Coenzyme.
J. Biol. Chem. V. 283 11832 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: 1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4... (FO1a)
1b: 1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4... (FO1b)
1c: 1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4... (FO1c)
1d: 1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4... (FO1d)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FO1
2
Ligand/Ion
1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4-DIHYDROPYRIMIDO[4,5-B]QUINOLIN-10(2H)-YL)-D-RIBITOL
2
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
3
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY C:7 , THR C:8 , SER C:192 , ASN C:193 , SER C:197
BINDING SITE FOR RESIDUE PO4 C 402
2
AC4
SOFTWARE
GLY D:7 , THR D:8 , SER D:192 , ASN D:193 , SER D:197 , SER D:229 , HOH D:405
BINDING SITE FOR RESIDUE PO4 D 402
3
AC7
SOFTWARE
PRO C:45 , TRP C:64 , LYS C:87 , ASP C:92 , HOH C:407 , HOH C:429
BINDING SITE FOR RESIDUE FO1 C 401
4
AC8
SOFTWARE
PRO D:45 , TRP D:64 , LEU D:86 , LYS D:87 , ASP D:92 , TRP D:151 , ILE D:152 , HOH D:404 , HOH D:480
BINDING SITE FOR RESIDUE FO1 D 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3c3da_ (A:)
1b: SCOP_d3c3db_ (B:)
1c: SCOP_d3c3dc_ (C:)
1d: SCOP_d3c3dd_ (D:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
CofD-like
(6)
Superfamily
:
CofD-like
(6)
Family
:
CofD-like
(5)
Protein domain
:
LPPG:FO 2-phospho-L-lactate transferase CofD
(3)
Methanosarcina mazei [TaxId: 2209]
(3)
1a
d3c3da_
A:
1b
d3c3db_
B:
1c
d3c3dc_
C:
1d
d3c3dd_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3c3dA01 (A:2-34,A:123-306)
1b: CATH_3c3dB01 (B:2-34,B:123-306)
1c: CATH_3c3dC01 (C:2-34,C:123-306)
1d: CATH_3c3dD01 (D:2-34,D:123-306)
2a: CATH_3c3dA02 (A:35-122)
2b: CATH_3c3dB02 (B:35-122)
2c: CATH_3c3dC02 (C:35-122)
2d: CATH_3c3dD02 (D:35-122)
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Organisms
(
)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
CofD-like domains
(3)
Methanosarcina mazei go1. Organism_taxid: 192952. Strain: go1 / dsm 3647 / goe1 / jcm 11883 / ocm 88.
(3)
1a
3c3dA01
A:2-34,A:123-306
1b
3c3dB01
B:2-34,B:123-306
1c
3c3dC01
C:2-34,C:123-306
1d
3c3dD01
D:2-34,D:123-306
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
CofD-like domain
(3)
Methanosarcina mazei go1. Organism_taxid: 192952. Strain: go1 / dsm 3647 / goe1 / jcm 11883 / ocm 88.
(3)
2a
3c3dA02
A:35-122
2b
3c3dB02
B:35-122
2c
3c3dC02
C:35-122
2d
3c3dD02
D:35-122
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (213 KB)
Header - Asym.Unit
Biol.Unit 1 (105 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
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