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3C35
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUR5 LIGAND-BINDING CORE IN COMPLEX WITH CESIUM AT 1.97 ANGSTROM RESOLUTION
Authors
:
M. L. Mayer
Date
:
27 Jan 08 (Deposition) - 17 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Plested, R. Vijayan, P. C. Biggin, M. L. Mayer
Molecular Basis Of Kainate Receptor Modulation By Sodium.
Neuron V. 58 720 2008
(for further references see the
PDB file header
)
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: CESIUM ION (CSa)
2b: CESIUM ION (CSb)
2c: CESIUM ION (CSc)
2d: CESIUM ION (CSd)
2e: CESIUM ION (CSe)
2f: CESIUM ION (CSf)
2g: CESIUM ION (CSg)
2h: CESIUM ION (CSh)
2i: CESIUM ION (CSi)
2j: CESIUM ION (CSj)
2k: CESIUM ION (CSk)
2l: CESIUM ION (CSl)
2m: CESIUM ION (CSm)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPRO... (KAIa)
4b: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPRO... (KAIb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
CS
13
Ligand/Ion
CESIUM ION
3
GOL
3
Ligand/Ion
GLYCEROL
4
KAI
2
Ligand/Ion
3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:96 , ILE A:99 , ASP A:100
BINDING SITE FOR RESIDUE CS A 301
02
AC2
SOFTWARE
GLU B:96 , ILE B:99 , ASP B:100
BINDING SITE FOR RESIDUE CS B 302
03
AC3
SOFTWARE
SER A:22 , LEU B:181
BINDING SITE FOR RESIDUE CS A 303
04
AC4
SOFTWARE
SER A:44 , ASN A:45 , PHE A:49
BINDING SITE FOR RESIDUE CS A 304
05
AC5
SOFTWARE
LYS A:150 , GLU A:155
BINDING SITE FOR RESIDUE CS A 305
06
AC6
SOFTWARE
LEU A:181 , SER B:22
BINDING SITE FOR RESIDUE CS A 306
07
AC7
SOFTWARE
THR B:118 , ILE B:120 , ASP B:121
BINDING SITE FOR RESIDUE CS B 307
08
AC8
SOFTWARE
SER B:44 , ASN B:45 , PHE B:49
BINDING SITE FOR RESIDUE CS B 308
09
AC9
SOFTWARE
THR A:118 , ILE A:120
BINDING SITE FOR RESIDUE CS A 309
10
BC1
SOFTWARE
LYS B:150 , GLU B:155
BINDING SITE FOR RESIDUE CS B 310
11
BC2
SOFTWARE
CYS B:256 , PRO B:257
BINDING SITE FOR RESIDUE CS B 311
12
BC3
SOFTWARE
PRO B:119 , ASP B:125
BINDING SITE FOR RESIDUE CS B 312
13
BC4
SOFTWARE
ASN B:29 , TYR B:51 , ASP B:52
BINDING SITE FOR RESIDUE CS B 313
14
BC5
SOFTWARE
LYS A:103 , ARG A:227 , LYS B:103
BINDING SITE FOR RESIDUE CL A 314
15
BC6
SOFTWARE
GLU A:13 , TYR A:61 , PRO A:88 , THR A:90 , ARG A:95 , GLY A:140 , SER A:141 , THR A:142 , GLU A:190
BINDING SITE FOR RESIDUE KAI A 401
16
BC7
SOFTWARE
GLU B:13 , TYR B:61 , PRO B:88 , THR B:90 , ARG B:95 , GLY B:140 , SER B:141 , THR B:142 , GLU B:190
BINDING SITE FOR RESIDUE KAI B 401
17
BC8
SOFTWARE
LYS A:60 , TYR A:61 , GLY A:62 , ALA A:63 , ARG A:138 , ASP A:139
BINDING SITE FOR RESIDUE GOL A 402
18
BC9
SOFTWARE
LYS B:60 , TYR B:61 , GLY B:62 , ARG B:138 , ASP B:139
BINDING SITE FOR RESIDUE GOL B 402
19
CC1
SOFTWARE
SER A:213 , LYS A:214 , PRO B:104 , MET B:106 , THR B:107 , GLN B:238
BINDING SITE FOR RESIDUE GOL A 403
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3c35a_ (A:)
1b: SCOP_d3c35b_ (B:)
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Classes
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)
(
)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
automated matches
(267)
Protein domain
:
automated matches
(267)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(73)
1a
d3c35a_
A:
1b
d3c35b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3c35A01 (A:4-108,A:214-257)
1b: CATH_3c35B01 (B:4-108,B:214-257)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
3c35A01
A:4-108,A:214-257
1b
3c35B01
B:4-108,B:214-257
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Pfam Domains
(0, 0)
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Chain A
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Asymmetric Unit 1
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Asym.Unit (98 KB)
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