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3C2U
Asym. Unit
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Asym.Unit (799 KB)
Biol.Unit 1 (793 KB)
Biol.Unit 2 (399 KB)
Biol.Unit 3 (401 KB)
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(1)
Title
:
STRUCTURE OF THE TWO SUBSITE D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM IN COMPLEX WITH 1,3-BIS[TRIS(HYDROXYMETHYL) METHYLAMINO]PROPANE
Authors
:
J. S. Brunzelle, D. B. Jordan, D. R. Mccaslin, A. Olczak, A. Wawrzak
Date
:
25 Jan 08 (Deposition) - 22 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Tetramer; Glycoside Hydrolase; Gh43; Alpha-L- Arabinofuranosidase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Brunzelle, D. B. Jordan, D. R. Mccaslin, A. Olczak, Z. Wawrzak
Structure Of The Two-Subsite Beta-D-Xylosidase From Selenomonas Ruminantium In Complex With 1, 3-Bis[Tris(Hydroxymethyl)Methylamino]Propane.
Arch. Biochem. Biophys. V. 474 157 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pa)
1b: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pb)
1c: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pc)
1d: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pd)
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No.
Name
Count
Type
Full Name
1
B3P
4
Ligand/Ion
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:14 , PHE A:31 , TRP A:73 , ALA A:74 , ASP A:127 , TYR A:184 , GLU A:186 , GLY A:205 , THR A:206 , ARG A:290 , PHE A:508
BINDING SITE FOR RESIDUE B3P A 539
2
AC2
SOFTWARE
ASP D:14 , PHE D:31 , TRP D:73 , ALA D:74 , ASP D:127 , TYR D:184 , GLU D:186 , GLY D:205 , THR D:206 , HIS D:248 , ARG D:290 , PHE D:508
BINDING SITE FOR RESIDUE B3P D 539
3
AC3
SOFTWARE
ASP C:14 , PHE C:31 , TRP C:73 , ALA C:74 , ASP C:127 , TYR C:184 , GLU C:186 , GLY C:205 , THR C:206 , HIS C:248 , ARG C:290 , PHE C:508
BINDING SITE FOR RESIDUE B3P C 539
4
AC4
SOFTWARE
ASP B:14 , PHE B:31 , TRP B:73 , ALA B:74 , ASP B:127 , TYR B:184 , GLU B:186 , GLY B:205 , THR B:206 , ARG B:290 , PHE B:508
BINDING SITE FOR RESIDUE B3P B 539
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3c2ua1 (A:1-326)
1b: SCOP_d3c2ub1 (B:1-326)
1c: SCOP_d3c2uc1 (C:1-326)
1d: SCOP_d3c2ud1 (D:1-326)
2a: SCOP_d3c2ua2 (A:327-538)
2b: SCOP_d3c2ub2 (B:327-537)
2c: SCOP_d3c2uc2 (C:327-537)
2d: SCOP_d3c2ud2 (D:327-537)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
5-bladed beta-propeller
(42)
Superfamily
:
Arabinanase/levansucrase/invertase
(37)
Family
:
automated matches
(1)
Protein domain
:
automated matches
(1)
Selenomonas ruminantium [TaxId: 971]
(1)
1a
d3c2ua1
A:1-326
1b
d3c2ub1
B:1-326
1c
d3c2uc1
C:1-326
1d
d3c2ud1
D:1-326
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Selenomonas ruminantium [TaxId: 971]
(1)
2a
d3c2ua2
A:327-538
2b
d3c2ub2
B:327-537
2c
d3c2uc2
C:327-537
2d
d3c2ud2
D:327-537
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3c2uA01 (A:1-328)
1b: CATH_3c2uB01 (B:1-328)
1c: CATH_3c2uC01 (C:1-328)
1d: CATH_3c2uD01 (D:1-328)
2a: CATH_3c2uA02 (A:329-538)
2b: CATH_3c2uB02 (B:329-537)
2c: CATH_3c2uC02 (C:329-537)
2d: CATH_3c2uD02 (D:329-537)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
5 Propellor
(21)
Topology
:
Tachylectin-2; Chain A
(21)
Homologous Superfamily
:
Glycosyl hydrolase domain; family 43
(20)
Selenomonas ruminantium. Organism_taxid: 971.
(1)
1a
3c2uA01
A:1-328
1b
3c2uB01
B:1-328
1c
3c2uC01
C:1-328
1d
3c2uD01
D:1-328
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Selenomonas ruminantium. Organism_taxid: 971.
(1)
2a
3c2uA02
A:329-538
2b
3c2uB02
B:329-537
2c
3c2uC02
C:329-537
2d
3c2uD02
D:329-537
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Asymmetric Unit 1
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Asym.Unit (799 KB)
Header - Asym.Unit
Biol.Unit 1 (793 KB)
Header - Biol.Unit 1
Biol.Unit 2 (399 KB)
Header - Biol.Unit 2
Biol.Unit 3 (401 KB)
Header - Biol.Unit 3
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