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3C0Z
Biol. Unit 2
Info
Asym.Unit (185 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (62 KB)
Biol.Unit 3 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF HUMAN HISTONE DEACETYLASE HDAC7 IN COMPLEX WITH SAHA
Authors
:
J. Min, A. Schuetz, P. Loppnau, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
21 Jan 08 (Deposition) - 19 Feb 08 (Release) - 27 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Hdac, Structural Genomics, Structural Genomics Consortium, Sgc, Alternative Splicing, Chromatin Regulator, Cytoplasm, Hydrolase, Nucleus, Phosphoprotein, Polymorphism, Repressor, Transcription, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Schuetz, J. Min, A. Allali-Hassani, M. Schapira, M. Shuen, P. Loppnau, R. Mazitschek, N. P. Kwiatkowski, T. A. Lewis, R. L. Maglathin, T. H. Mclean, A. Bochkarev, A. N. Plotnikov, M. Vedadi, C. H. Arrowsmith
Human Hdac7 Harbors A Class Iia Histone Deacetylase-Specific Zinc Binding Motif And Cryptic Deacetylase Activity.
J. Biol. Chem. V. 283 11355 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
2a: OCTANEDIOIC ACID HYDROXYAMIDE PHEN... (SHHa)
2b: OCTANEDIOIC ACID HYDROXYAMIDE PHEN... (SHHb)
2c: OCTANEDIOIC ACID HYDROXYAMIDE PHEN... (SHHc)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
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No.
Name
Count
Type
Full Name
1
K
-1
Ligand/Ion
POTASSIUM ION
2
SHH
1
Ligand/Ion
OCTANEDIOIC ACID HYDROXYAMIDE PHENYLAMIDE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
SHH B:301 , ASP B:707 , HIS B:709 , ASP B:801
BINDING SITE FOR RESIDUE ZN B 101
2
AC6
SOFTWARE
CYS B:533 , CYS B:535 , HIS B:541 , CYS B:618
BINDING SITE FOR RESIDUE ZN B 102
3
AC7
SOFTWARE
ASP B:705 , ASP B:707 , HIS B:709 , SER B:728 , LEU B:729
BINDING SITE FOR RESIDUE K B 201
4
AC8
SOFTWARE
PHE B:718 , ASP B:721 , VAL B:724 , HOH B:906 , HOH B:907
BINDING SITE FOR RESIDUE K B 202
5
BC5
SOFTWARE
ZN B:101 , HIS B:669 , HIS B:670 , GLY B:678 , PHE B:679 , ASP B:707 , HIS B:709 , ASP B:801 , HOH B:986
BINDING SITE FOR RESIDUE SHH B 301
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3c0za_ (A:)
1b: SCOP_d3c0zb_ (B:)
1c: SCOP_d3c0zc_ (C:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Histone deacetylase, HDAC
(28)
Protein domain
:
Histone deacetylase 7, HDAC7
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3c0za_
A:
1b
d3c0zb_
B:
1c
d3c0zc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3c0zC00 (C:519-899)
1b: CATH_3c0zB00 (B:516-901)
1c: CATH_3c0zA00 (A:515-900)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.20, no name defined]
(21)
Human (Homo sapiens)
(17)
1a
3c0zC00
C:519-899
1b
3c0zB00
B:516-901
1c
3c0zA00
A:515-900
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (185 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
Biol.Unit 3 (60 KB)
Header - Biol.Unit 3
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