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3C0Y
Biol. Unit 1
Info
Asym.Unit (186 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (61 KB)
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Title
:
CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF HUMAN HISTONE DEACETYLASE HDAC7
Authors
:
J. R. Min, A. Schuetz, A. Allali-Hassani, P. Loppnau, N. P. Kwiatkowski, R. Mazitschek, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, M. Vedadi, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
21 Jan 08 (Deposition) - 19 Feb 08 (Release) - 27 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Histone Deacetylase, Structural Genomics, Structural Genomics Consortium, Sgc, Alternative Splicing, Chromatin Regulator, Cytoplasm, Hydrolase, Nucleus, Phosphoprotein, Polymorphism, Repressor, Transcription, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Schuetz, J. Min, A. Allali-Hassani, M. Schapira, M. Shuen, P. Loppnau, R. Mazitschek, N. P. Kwiatkowski, T. A. Lewis, R. L. Maglathin, T. H. Mclean, A. Bochkarev, A. N. Plotnikov, M. Vedadi, C. H. Arrowsmith
Human Hdac7 Harbors A Class Iia Histone Deacetylase-Specific Zinc Binding Motif And Cryptic Deacetylase Activity.
J. Biol. Chem. V. 283 11355 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:289 , ASP A:707 , HIS A:709 , ASP A:801
BINDING SITE FOR RESIDUE ZN A 401
2
AC2
SOFTWARE
CYS A:533 , CYS A:535 , HIS A:541 , CYS A:618
BINDING SITE FOR RESIDUE ZN A 402
3
AC3
SOFTWARE
ASP A:705 , ASP A:707 , HIS A:709 , SER A:728 , LEU A:729
BINDING SITE FOR RESIDUE K A 904
4
AC4
SOFTWARE
HOH A:41 , HOH A:52 , PHE A:718 , ASP A:721 , VAL A:724 , PHE A:755
BINDING SITE FOR RESIDUE K A 905
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SAPs(SNPs)/Variants
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3c0ya1 (A:515-900)
1b: SCOP_d3c0yb_ (B:)
1c: SCOP_d3c0yc_ (C:)
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Histone deacetylase, HDAC
(28)
Protein domain
:
Histone deacetylase 7, HDAC7
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3c0ya1
A:515-900
1b
d3c0yb_
B:
1c
d3c0yc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3c0yB00 (B:517-901)
1b: CATH_3c0yC00 (C:519-899)
1c: CATH_3c0yA00 (A:515-900)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.20, no name defined]
(21)
Human (Homo sapiens)
(17)
1a
3c0yB00
B:517-901
1b
3c0yC00
C:519-899
1c
3c0yA00
A:515-900
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Show PDB file:
Asym.Unit (186 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
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