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3C0R
Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
STRUCTURE OF OVARIAN TUMOR (OTU) DOMAIN IN COMPLEX WITH UBIQUITIN
Authors
:
T. E. Messick, R. Marmorstein
Date
:
21 Jan 08 (Deposition) - 19 Feb 08 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Ubiquitin Hydrolase, Deubiquitinase, Cell Cycle, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. E. Messick, N. S. Russell, A. J. Iwata, K. L. Sarachan, R. Shiekhattar, J. R. Shanks, F. E. Reyes-Turcu, K. D. Wilkinson, R. Marmorstein
Structural Basis For Ubiquitin Recognition By The Otu1 Ovarian Tumor Domain Protein
J. Biol. Chem. V. 283 11038 2008
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 3-AMINOPROPANE (3CNa)
1b: 3-AMINOPROPANE (3CNb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3CN
2
Ligand/Ion
3-AMINOPROPANE
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:116 , ASP A:117 , CYS A:120 , TRP A:175 , ILE A:221 , HIS A:222 , GLY B:75
BINDING SITE FOR RESIDUE 3CN B 76
2
AC2
SOFTWARE
ASP C:116 , ASP C:117 , CYS C:120 , TRP C:175 , ILE C:221 , HIS C:222 , GLY D:75
BINDING SITE FOR RESIDUE 3CN D 76
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (B:1-75,D:1-75,B:1-75,D:1-75,-|-|B:...)
2: UBIQUITIN_1 (B:27-52,D:27-52,B:27-52,D:27-52,-|...)
3: OTU (A:109-229,C:109-229)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_HUMAN
1-76
2
B:1-75
D:1-75
RL40_HUMAN
1-76
2
B:1-75
D:1-75
UBB_HUMAN
1-76
77-152
153-228
2
-
-
B:1-75
D:1-75
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
2
-
-
-
-
-
-
-
-
B:1-75
D:1-75
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_HUMAN
27-52
2
B:27-52
D:27-52
RL40_HUMAN
27-52
2
B:27-52
D:27-52
UBB_HUMAN
27-52
103-128
179-204
2
-
-
B:27-52
D:27-52
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
2
-
-
-
-
-
-
-
-
B:27-52
D:27-52
3
OTU
PS50802
OTU domain profile.
OTU1_YEAST
109-229
2
A:109-229
C:109-229
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Exons
(2, 4)
Info
All Exons
Exon 1.2 (B:1-75 | D:1-75)
Exon 2.1 (A:92-266 | C:92-266)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
3: Boundary -/2.1
4: Boundary 2.1/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
1.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
2
B:1-75
D:1-75
75
75
2.1
YFL044C
1
YFL044C.1
VI:45560-44655
906
OTU1_YEAST
1-301
301
2
A:92-266
C:92-266
175
175
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3c0rb_ (B:)
1b: SCOP_d3c0rd_ (D:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d3c0rb_
B:
1b
d3c0rd_
D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3c0rB00 (B:1-75)
1b: CATH_3c0rD00 (D:1-75)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Baker's yeast (Saccharomyces cerevisiae)
(18)
1a
3c0rB00
B:1-75
1b
3c0rD00
D:1-75
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (191 KB)
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