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3C0D
Asym. Unit
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Asym.Unit (146 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (21 KB)
Biol.Unit 3 (20 KB)
Biol.Unit 4 (20 KB)
Biol.Unit 5 (21 KB)
Biol.Unit 6 (21 KB)
Biol.Unit 7 (21 KB)
Biol.Unit 8 (20 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PUTATIVE NITRITE REDUCTASE NADPH (SMALL SUBUNIT) OXIDOREDUCTASE PROTEIN Q87HB1. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VPR162
Authors
:
A. P. Kuzin, M. Abashidze, J. Seetharaman, S. M. Vorobiev, D. Wang, Y. Fang, L. Owens, L-C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date
:
19 Jan 08 (Deposition) - 04 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Nesg, Vpr162, Q87Hb1, Xray, Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. Kuzin, M. Abashidze, J. Seetharaman, S. M. Vorobiev, D. Wang, Y. Fang, L. Owens, L-C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Putative Nitrite Reductase Nadph (Small Subunit) Oxidoreductase Protein Q87Hb1.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
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No.
Name
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Type
Full Name
1
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3c0da1 (A:4-111)
1b: SCOP_d3c0db_ (B:)
1c: SCOP_d3c0dc_ (C:)
1d: SCOP_d3c0dd_ (D:)
1e: SCOP_d3c0de_ (E:)
1f: SCOP_d3c0df_ (F:)
1g: SCOP_d3c0dg_ (G:)
1h: SCOP_d3c0dh_ (H:)
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Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
NirD-like
(3)
Protein domain
:
NADH-nitrite reductase small subunit NirD
(3)
Vibrio parahaemolyticus [TaxId: 670]
(1)
1a
d3c0da1
A:4-111
1b
d3c0db_
B:
1c
d3c0dc_
C:
1d
d3c0dd_
D:
1e
d3c0de_
E:
1f
d3c0df_
F:
1g
d3c0dg_
G:
1h
d3c0dh_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3c0dA00 (A:4-112)
1b: CATH_3c0dB00 (B:4-110)
1c: CATH_3c0dC00 (C:4-109)
1d: CATH_3c0dD00 (D:4-109)
1e: CATH_3c0dE00 (E:4-109)
1f: CATH_3c0dF00 (F:4-109)
1g: CATH_3c0dG00 (G:4-109)
1h: CATH_3c0dH00 (H:4-109)
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Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633 / serotype o3:k6.
(1)
1a
3c0dA00
A:4-112
1b
3c0dB00
B:4-110
1c
3c0dC00
C:4-109
1d
3c0dD00
D:4-109
1e
3c0dE00
E:4-109
1f
3c0dF00
F:4-109
1g
3c0dG00
G:4-109
1h
3c0dH00
H:4-109
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Asymmetric Unit 1
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Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (21 KB)
Header - Biol.Unit 1
Biol.Unit 2 (21 KB)
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Biol.Unit 3 (20 KB)
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Biol.Unit 4 (20 KB)
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