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3BZE
Asym. Unit
Info
Asym.Unit (267 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (67 KB)
Biol.Unit 4 (69 KB)
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(1)
Title
:
THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-E
Authors
:
H. L. Hoare, L. C. Sullivan, L. K. Ely, T. Beddoe, K. N. Henderson, J. Lin, C. S. Clements, H. H. Reid, A. G. Brooks, J. Rossjohn
Date
:
17 Jan 08 (Deposition) - 29 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,P,Q,R,S
Biol. Unit 1: A,B,P (1x)
Biol. Unit 2: C,D,Q (1x)
Biol. Unit 3: E,F,R (1x)
Biol. Unit 4: G,H,S (1x)
Keywords
:
Mhc Fold, Transmembrane, Disease Mutation, Glycation, Glycoprotein, Immune Response, Immunoglobulin Domain, Mhc I, Pyrrolidone Carboxylic Acid, Secreted, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. L. Hoare, L. C. Sullivan, C. S. Clements, L. K. Ely, T. Beddoe, K. N. Henderson, J. Lin, H. H. Reid, A. G. Brooks, J. Rossjohn
Subtle Changes In Peptide Conformation Profoundly Affect Recognition Of The Non-Classical Mhc Class I Molecule Hla-E By The Cd94-Nkg2 Natural Killer Cell Receptors
J. Mol. Biol. V. 377 1297 2008
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059510 (N77K, chain A/C/E/G, )
2: VAR_004395 (G83R, chain A/C/E/G, )
3: VAR_016651 (R107G, chain A/C/E/G, )
4: VAR_016652 (R157G, chain A/C/E/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059510
N
98
K
HLAE_HUMAN
Polymorphism
1059510
A/C/E/G
N
77
K
2
UniProt
VAR_004395
G
104
R
HLAE_HUMAN
Polymorphism
---
A/C/E/G
G
83
R
3
UniProt
VAR_016651
R
128
G
HLAE_HUMAN
Polymorphism
1264457
A/C/E/G
R
107
G
4
UniProt
VAR_016652
R
178
G
HLAE_HUMAN
Polymorphism
41562314
A/C/E/G
R
157
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,D:78-84,F:78-84,H:78-84,A:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
4
B:78-84
D:78-84
F:78-84
H:78-84
HLAE_HUMAN
278-284
4
A:257-263
C:257-263
E:257-263
G:257-263
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Exons
(4, 16)
Info
All Exons
Exon 1.1d (A:2-91 | C:2-91 | E:2-91 | G:2-91)
Exon 1.1p (A:91-183 | C:91-183 | E:91-183 | G...)
Exon 1.1x (A:183-274 | C:183-274 | E:183-274 ...)
Exon 2.10q (P:1-9 | Q:1-9 | R:1-9 | S:1-9)
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All Exon Boundaries
1: Boundary 1.1a/1.1d
2: Boundary 1.1d/1.1p
3: Boundary 1.1p/1.1x
4: Boundary 1.1x/1.1ad
5: Boundary -/2.10q
6: Boundary 2.10q/2.10x
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000383597
1a
ENSE00001870885
HSCHR6_MHC_QBL:30446762-30446890
129
HLAE_HUMAN
1-22
22
0
-
-
1.1d
ENST00000383597
1d
ENSE00001611849
HSCHR6_MHC_QBL:30447021-30447290
270
HLAE_HUMAN
22-112
91
4
A:2-91
C:2-91
E:2-91
G:2-91
90
90
90
90
1.1p
ENST00000383597
1p
ENSE00001745192
HSCHR6_MHC_QBL:30447535-30447810
276
HLAE_HUMAN
112-204
93
4
A:91-183
C:91-183
E:91-183
G:91-183
93
93
93
93
1.1x
ENST00000383597
1x
ENSE00001623966
HSCHR6_MHC_QBL:30448432-30448707
276
HLAE_HUMAN
204-296
93
4
A:183-274
C:183-274
E:183-274 (gaps)
G:183-274
92
92
92
92
1.1ad
ENST00000383597
1ad
ENSE00001618059
HSCHR6_MHC_QBL:30448832-30448948
117
HLAE_HUMAN
296-335
40
0
-
-
1.1an
ENST00000383597
1an
ENSE00001758462
HSCHR6_MHC_QBL:30449699-30449731
33
HLAE_HUMAN
335-346
12
0
-
-
1.2
ENST00000383597
2
ENSE00001707049
HSCHR6_MHC_QBL:30449836-30449878
43
HLAE_HUMAN
346-358
13
0
-
-
1.3b
ENST00000383597
3b
ENSE00001598949
HSCHR6_MHC_QBL:30450044-30451500
1457
HLAE_HUMAN
-
0
0
-
-
2.10q
ENST00000383621
10q
ENSE00001879878
HSCHR6_MHC_QBL:29792786-29792882
97
HLAG_HUMAN
1-25
25
4
P:1-9
Q:1-9
R:1-9
S:1-9
9
9
9
9
2.10x
ENST00000383621
10x
ENSE00001604643
HSCHR6_MHC_QBL:29793012-29793281
270
HLAG_HUMAN
25-115
91
0
-
-
2.10ac
ENST00000383621
10ac
ENSE00001699371
HSCHR6_MHC_QBL:29793508-29793783
276
HLAG_HUMAN
115-207
93
0
-
-
2.11h
ENST00000383621
11h
ENSE00001683952
HSCHR6_MHC_QBL:29794383-29794658
276
HLAG_HUMAN
207-299
93
0
-
-
2.11p
ENST00000383621
11p
ENSE00001612508
HSCHR6_MHC_QBL:29794781-29794897
117
HLAG_HUMAN
299-338
40
0
-
-
2.14e
ENST00000383621
14e
ENSE00001622793
HSCHR6_MHC_QBL:29795343-29795375
33
HLAG_HUMAN
338-338
1
0
-
-
2.14q
ENST00000383621
14q
ENSE00001497869
HSCHR6_MHC_QBL:29795733-29796106
374
HLAG_HUMAN
-
0
0
-
-
[
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SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3bzeb_ (B:)
1b: SCOP_d3bzed_ (D:)
1c: SCOP_d3bzef_ (F:)
1d: SCOP_d3bzeh_ (H:)
2a: SCOP_d3bzea1 (A:182-274)
2b: SCOP_d3bzec1 (C:182-274)
2c: SCOP_d3bzee1 (E:182-274)
2d: SCOP_d3bzeg1 (G:182-274)
3a: SCOP_d3bzea2 (A:2-181)
3b: SCOP_d3bzec2 (C:2-181)
3c: SCOP_d3bzee2 (E:2-181)
3d: SCOP_d3bzeg2 (G:2-181)
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Folds
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Superfamilies
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d3bzeb_
B:
1b
d3bzed_
D:
1c
d3bzef_
F:
1d
d3bzeh_
H:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d3bzea1
A:182-274
2b
d3bzec1
C:182-274
2c
d3bzee1
E:182-274
2d
d3bzeg1
G:182-274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-E [TaxId: 9606]
(8)
3a
d3bzea2
A:2-181
3b
d3bzec2
C:2-181
3c
d3bzee2
E:2-181
3d
d3bzeg2
G:2-181
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_3bzeA01 (A:2-181)
1b: CATH_3bzeC01 (C:2-181)
1c: CATH_3bzeE01 (E:2-181)
1d: CATH_3bzeG01 (G:2-181)
2a: CATH_3bzeB00 (B:0-99)
2b: CATH_3bzeA02 (A:182-272)
2c: CATH_3bzeC02 (C:182-272)
2d: CATH_3bzeG02 (G:182-272)
2e: CATH_3bzeE02 (E:182-272)
2f: CATH_3bzeD00 (D:0-99)
2g: CATH_3bzeF00 (F:0-99)
2h: CATH_3bzeH00 (H:0-99)
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
3bzeA01
A:2-181
1b
3bzeC01
C:2-181
1c
3bzeE01
E:2-181
1d
3bzeG01
G:2-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
3bzeB00
B:0-99
2b
3bzeA02
A:182-272
2c
3bzeC02
C:182-272
2d
3bzeG02
G:182-272
2e
3bzeE02
E:182-272
2f
3bzeD00
D:0-99
2g
3bzeF00
F:0-99
2h
3bzeH00
H:0-99
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (267 KB)
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