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3BYT
Biol. Unit 3
Info
Asym.Unit (232 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
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(1)
Title
:
A COMPLEX BETWEEN A VARIANT OF STAPHYLOCOCCAL ENTEROTOXIN C3 AND THE VARIABLE DOMAIN OF THE MURINE T CELL RECEPTOR BETA CHAIN 8.2
Authors
:
S. Cho, J. S. Eric
Date
:
16 Jan 08 (Deposition) - 12 May 09 (Release) - 12 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Secreted, Superantigen, Toxin
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Cho, C. P. Swaminathan, M. C. Kerzic, R. Guan, J. Yang, M. C. Kieke, P. S. Andersen, D. M. Krantz, R. A. Mariuzza, S. J. Eric
Manipulating The Coupled Folding And Binding Process Drives Affinity Maturation In A Protein-Protein Complex
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: STAPH_STREP_TOXIN_1 (F:110-119)
2: STAPH_STREP_TOXIN_2 (F:149-172)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STAPH_STREP_TOXIN_1
PS00277
Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.
ENTC3_STAAU
139-148
1
-
-
F:110-119
-
2
STAPH_STREP_TOXIN_2
PS00278
Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.
ENTC3_STAAU
178-201
1
-
-
F:149-172
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3byta_ (A:)
1b: SCOP_d3bytc_ (C:)
1c: SCOP_d3byte_ (E:)
1d: SCOP_d3bytg_ (G:)
2a: SCOP_d3bytb1 (B:2-118)
2b: SCOP_d3bytd1 (D:2-118)
2c: SCOP_d3bytf1 (F:2-118)
2d: SCOP_d3byth1 (H:2-118)
3a: SCOP_d3bytb2 (B:119-237)
3b: SCOP_d3bytd2 (D:119-237)
3c: SCOP_d3bytf2 (F:119-237)
3d: SCOP_d3byth2 (H:119-237)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
1a
d3byta_
A:
1b
d3bytc_
C:
1c
d3byte_
E:
1d
d3bytg_
G:
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Superantigen toxins, N-terminal domain
(91)
Protein domain
:
Staphylococcal enterotoxin C3, SEC3
(20)
Staphylococcus aureus [TaxId: 1280]
(20)
2a
d3bytb1
B:2-118
2b
d3bytd1
D:2-118
2c
d3bytf1
F:2-118
2d
d3byth1
H:2-118
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Superantigen toxins, C-terminal domain
(103)
Family
:
Superantigen toxins, C-terminal domain
(94)
Protein domain
:
Staphylococcal enterotoxin C3, SEC3
(20)
Staphylococcus aureus [TaxId: 1280]
(20)
3a
d3bytb2
B:119-237
3b
d3bytd2
D:119-237
3c
d3bytf2
F:119-237
3d
d3byth2
H:119-237
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_3bytB01 (B:2-31,B:118-237)
1b: CATH_3bytD01 (D:2-31,D:118-237)
1c: CATH_3bytF01 (F:2-31,F:118-237)
1d: CATH_3bytH01 (H:2-31,H:118-237)
2a: CATH_3bytF02 (F:32-117)
2b: CATH_3bytD02 (D:32-117)
2c: CATH_3bytB02 (B:32-117)
2d: CATH_3bytH02 (H:32-117)
3a: CATH_3bytA00 (A:2-110)
3b: CATH_3bytC00 (C:2-117)
3c: CATH_3bytE00 (E:2-117)
3d: CATH_3bytG00 (G:2-117)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.120, no name defined]
(91)
Mouse (Mus musculus)
(2)
1a
3bytB01
B:2-31,B:118-237
1b
3bytD01
D:2-31,D:118-237
1c
3bytF01
F:2-31,F:118-237
1d
3bytH01
H:2-31,H:118-237
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Mouse (Mus musculus)
(2)
2a
3bytF02
F:32-117
2b
3bytD02
D:32-117
2c
3bytB02
B:32-117
2d
3bytH02
H:32-117
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
3a
3bytA00
A:2-110
3b
3bytC00
C:2-117
3c
3bytE00
E:2-117
3d
3bytG00
G:2-117
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (232 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (59 KB)
Header - Biol.Unit 3
Biol.Unit 4 (59 KB)
Header - Biol.Unit 4
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