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3BYQ
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DUF1185 FAMILY PROTEIN (BB2672) FROM BORDETELLA BRONCHISEPTICA RB50 AT 1.70 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
16 Jan 08 (Deposition) - 29 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Bakolitsa, A. Kumar, K. K. Jin, D. Mcmullan, S. S. Krishna, M. D. Miller, P. Abdubek, C. Acosta, T. Astakhova, H. L. Axelrod, P. Burra, D. Carlton, C. Chen, H. J. Chiu, T. Clayton, D. Das, M. C. Deller, L. Duan, Y. Elias, K. Ellrott, D. Ernst, C. L. Farr, J. Feuerhelm, J. C. Grant, A. Grzechnik, S. K. Grzechnik, G. W. Han, L. Jaroszewski, H. A. Johnson, H. E. Klock, M. W. Knuth, P. Kozbial, D. Marciano, A. T. Morse, K. D. Murphy, E. Nigoghossian, A. Nopakun, L. Okach, J. Paulsen, C. Puckett, R. Reyes, C. L. Rife, N. Sefcovic, H. J. Tien, C. B. Trame, C. V. Trout, H. Van Den Bedem, D. Weekes, A. White, Q. Xu, K. O. Hodgson, J. Wooley, M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Structures Of The First Representatives Of Pfam Family Pf06684 (Duf1185) Reveal A Novel Variant Of The Bacillus Chorismate Mutase Fold And Suggest A Role In Amino-Acid Metabolism.
Acta Crystallogr. , Sect. F V. 66 1182 2010
[
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Hetero Components
(4, 58)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
EDO
27
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
25
Mod. Amino Acid
SELENOMETHIONINE
4
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: BC1 (SOFTWARE)
14: BC2 (SOFTWARE)
15: BC3 (SOFTWARE)
16: BC4 (SOFTWARE)
17: BC5 (SOFTWARE)
18: BC6 (SOFTWARE)
19: BC7 (SOFTWARE)
20: BC8 (SOFTWARE)
21: BC9 (SOFTWARE)
22: CC1 (SOFTWARE)
23: CC2 (SOFTWARE)
24: CC3 (SOFTWARE)
25: CC4 (SOFTWARE)
26: CC6 (SOFTWARE)
27: CC7 (SOFTWARE)
28: CC8 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:81 , ARG A:106 , VAL A:116 , EDO A:197
BINDING SITE FOR RESIDUE CL A 193
02
AC2
SOFTWARE
LYS B:81 , ARG B:106 , VAL B:116 , EDO C:202
BINDING SITE FOR RESIDUE CL B 193
03
AC3
SOFTWARE
ARG B:142
BINDING SITE FOR RESIDUE CL C 193
04
AC4
SOFTWARE
LYS C:81 , ARG C:106 , VAL C:116
BINDING SITE FOR RESIDUE CL C 194
05
AC5
SOFTWARE
VAL A:13 , THR A:15 , TYR A:17 , LYS A:29 , THR A:70 , EDO A:200 , HOH A:357 , HOH A:397 , ARG B:9 , GLU B:66 , HOH B:328
BINDING SITE FOR RESIDUE PG4 A 194
06
AC6
SOFTWARE
ILE A:12 , GLU A:14 , GLU A:149 , HOH A:225 , ILE B:152 , GLN B:153
BINDING SITE FOR RESIDUE EDO A 195
07
AC7
SOFTWARE
GLN A:26 , LEU A:28 , ALA A:171 , HOH A:249 , HOH A:384
BINDING SITE FOR RESIDUE EDO A 196
08
AC8
SOFTWARE
LYS A:81 , TRP A:103 , MSE A:115 , TYR A:140 , ARG A:142 , PHE A:145 , CL A:193
BINDING SITE FOR RESIDUE EDO A 197
09
AC9
SOFTWARE
ASP A:88 , ARG A:159 , PRO B:158 , ARG B:159 , ASP C:88
BINDING SITE FOR RESIDUE EDO A 198
10
AD1
SOFTWARE
MSE B:1 , SER B:2 , LEU B:3 , ARG B:38 , THR B:181
BINDING SITE FOR RESIDUE EDO B 203
11
AD2
SOFTWARE
GLY C:21
BINDING SITE FOR RESIDUE EDO C 197
12
AD3
SOFTWARE
GLN C:26 , LEU C:28 , GLY C:170 , ALA C:171 , HOH C:224 , HOH C:234
BINDING SITE FOR RESIDUE EDO C 198
13
BC1
SOFTWARE
ASN A:20 , TYR A:41 , GLY A:43 , ARG A:44 , TYR A:45 , ASP A:88 , GLY A:89 , HIS A:93 , HOH A:244 , HOH A:352
BINDING SITE FOR RESIDUE EDO A 199
14
BC2
SOFTWARE
PG4 A:194 , HOH A:287 , EDO B:200
BINDING SITE FOR RESIDUE EDO A 200
15
BC3
SOFTWARE
EDO A:202 , HOH A:312
BINDING SITE FOR RESIDUE EDO A 201
16
BC4
SOFTWARE
TRP A:103 , ARG A:106 , TYR A:140 , ARG A:192 , EDO A:201
BINDING SITE FOR RESIDUE EDO A 202
17
BC5
SOFTWARE
GLN A:153 , ILE B:12 , GLU B:14 , GLU B:149 , HOH B:210 , HOH B:350
BINDING SITE FOR RESIDUE EDO B 194
18
BC6
SOFTWARE
LEU B:28 , GLY B:170 , ALA B:171 , EDO B:199 , HOH B:252
BINDING SITE FOR RESIDUE EDO B 195
19
BC7
SOFTWARE
ARG B:57 , TRP B:103 , SER B:107 , HOH B:230 , ARG C:44
BINDING SITE FOR RESIDUE EDO B 196
20
BC8
SOFTWARE
PRO B:22 , VAL B:173 , HIS B:174 , ALA B:175 , TYR C:45
BINDING SITE FOR RESIDUE EDO B 197
21
BC9
SOFTWARE
ALA B:42 , GLY B:43 , ARG B:44 , HIS B:137 , HIS B:188 , HOH B:264 , HOH B:342
BINDING SITE FOR RESIDUE EDO B 198
22
CC1
SOFTWARE
GLN B:26 , PRO B:27 , THR B:169 , GLY B:170 , EDO B:195 , HOH B:361
BINDING SITE FOR RESIDUE EDO B 199
23
CC2
SOFTWARE
GLU A:66 , EDO A:200 , HOH A:299 , VAL B:13 , LYS B:29 , THR B:70 , EDO B:204 , HOH B:383
BINDING SITE FOR RESIDUE EDO B 200
24
CC3
SOFTWARE
TYR B:140 , ARG B:192 , HOH B:374 , TRP C:103 , ARG C:106 , EDO C:201
BINDING SITE FOR RESIDUE EDO B 201
25
CC4
SOFTWARE
ARG B:176 , HOH B:375 , MSE C:50
BINDING SITE FOR RESIDUE EDO B 202
26
CC6
SOFTWARE
ARG A:9 , GLU A:66 , THR B:15 , LYS B:29 , EDO B:200 , HOH B:318
BINDING SITE FOR RESIDUE EDO B 204
27
CC7
SOFTWARE
ARG C:9 , THR C:15 , TYR C:17 , LYS C:29 , EDO C:203 , HOH C:384
BINDING SITE FOR RESIDUE PG4 C 195
28
CC8
SOFTWARE
ASN B:20 , TYR C:41 , GLY C:43 , ARG C:44 , TYR C:45 , ASP C:88 , HIS C:93 , HOH C:342 , HOH C:358
BINDING SITE FOR RESIDUE EDO C 196
29
DC2
SOFTWARE
ALA A:42 , GLY A:43 , ARG A:44 , ASP C:189 , HOH C:220
BINDING SITE FOR RESIDUE EDO C 199
30
DC3
SOFTWARE
ILE C:12 , GLU C:14 , GLU C:149 , ILE C:152 , GLN C:153 , HOH C:205 , HOH C:353 , HOH C:383
BINDING SITE FOR RESIDUE EDO C 200
31
DC4
SOFTWARE
EDO B:201 , TRP C:103 , ARG C:106 , SER C:107 , GLU C:111
BINDING SITE FOR RESIDUE EDO C 201
32
DC5
SOFTWARE
LYS B:81 , TRP B:103 , CL B:193 , TYR C:140 , ARG C:142 , HOH C:245
BINDING SITE FOR RESIDUE EDO C 202
33
DC6
SOFTWARE
PG4 C:195 , HOH C:259
BINDING SITE FOR RESIDUE EDO C 203
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3byqa1 (A:2-192)
1b: SCOP_d3byqb_ (B:)
1c: SCOP_d3byqc_ (C:)
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(
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
BB2672-like
(2)
Family
:
BB2672-like
(2)
Protein domain
:
Uncharacterized protein BB2672
(1)
Bordetella bronchiseptica [TaxId: 518]
(1)
1a
d3byqa1
A:2-192
1b
d3byqb_
B:
1c
d3byqc_
C:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3byqA00 (A:2-192)
1b: CATH_3byqB00 (B:2-192)
1c: CATH_3byqC00 (C:2-192)
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
BB2672-like
(2)
Bordetella bronchiseptica rb50. Organism_taxid: 257310. Strain: rb50 /nctc 13252.
(1)
1a
3byqA00
A:2-192
1b
3byqB00
B:2-192
1c
3byqC00
C:2-192
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (115 KB)
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