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3BYI
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (36 KB)
Biol.Unit 4 (35 KB)
Biol.Unit 5 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RHO GTPASE ACTIVATING PROTEIN 15 (ARHGAP15)
Authors
:
L. Shrestha, J. Tickle, J. Elkins, N. Burgess-Brown, C. Johansson, E. Papagrigoriou, K. Kavanagh, A. C. W. Pike, E. Ugochukwu, J. Uppenbe Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, D. Doyle, Structur Genomics Consortium (Sgc)
Date
:
16 Jan 08 (Deposition) - 26 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Rho Gtpase, Bm046, Arhgap15, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Shrestha, J. Tickle, J. Elkins, N. Burgess-Brown, C. Johansson, E. Papagrigoriou, K. Kavanagh, A. C. W. Pike, E. Ugochukwu, J. Uppenberg, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, D. Doyle
Crystal Structure Of Human Rho Gtpase Activating Protein 15 (Arhgap15).
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RHOGAP (A:281-470,B:281-470,C:281-470,D:28...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHOGAP
PS50238
Rho GTPase-activating proteins domain profile.
RHG15_HUMAN
281-470
4
A:281-470
B:281-470
C:281-470
D:281-470
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Exons
(6, 24)
Info
All Exons
Exon 1.15 (A:261-276 | B:261-276 | C:263-276 ...)
Exon 1.16 (A:276-309 | B:276-309 | C:276-309 ...)
Exon 1.17 (A:309-335 | B:309-335 | C:309-335 ...)
Exon 1.22 (A:335-380 | B:335-380 | C:335-380 ...)
Exon 1.23 (A:380-415 | B:380-415 | C:380-415 ...)
Exon 1.24 (A:415-471 | B:415-471 | C:415-472 ...)
View:
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All Exon Boundaries
1: Boundary 1.14/1.15
2: Boundary 1.15/1.16
3: Boundary 1.16/1.17
4: Boundary 1.17/1.22
5: Boundary 1.22/1.23
6: Boundary 1.23/1.24
7: Boundary 1.24/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000295095
3
ENSE00001273264
chr2:
143886883-143887035
153
RHG15_HUMAN
-
0
0
-
-
1.4
ENST00000295095
4
ENSE00000964232
chr2:
143913046-143913224
179
RHG15_HUMAN
1-55
55
0
-
-
1.6
ENST00000295095
6
ENSE00001070352
chr2:
143959703-143959771
69
RHG15_HUMAN
56-78
23
0
-
-
1.7
ENST00000295095
7
ENSE00001070355
chr2:
143973953-143974014
62
RHG15_HUMAN
79-99
21
0
-
-
1.9
ENST00000295095
9
ENSE00001070353
chr2:
143986150-143986237
88
RHG15_HUMAN
99-128
30
0
-
-
1.12
ENST00000295095
12
ENSE00001070354
chr2:
144008080-144008169
90
RHG15_HUMAN
129-158
30
0
-
-
1.13
ENST00000295095
13
ENSE00000995615
chr2:
144193170-144193268
99
RHG15_HUMAN
159-191
33
0
-
-
1.14
ENST00000295095
14
ENSE00000995614
chr2:
144194482-144194611
130
RHG15_HUMAN
192-235
44
0
-
-
1.15
ENST00000295095
15
ENSE00001273292
chr2:
144244942-144245064
123
RHG15_HUMAN
235-276
42
4
A:261-276
B:261-276
C:263-276
D:263-276
16
16
14
14
1.16
ENST00000295095
16
ENSE00001207847
chr2:
144276835-144276933
99
RHG15_HUMAN
276-309
34
4
A:276-309
B:276-309
C:276-309
D:276-309
34
34
34
34
1.17
ENST00000295095
17
ENSE00001207841
chr2:
144313977-144314054
78
RHG15_HUMAN
309-335
27
4
A:309-335
B:309-335
C:309-335
D:309-335
27
27
27
27
1.22
ENST00000295095
22
ENSE00001751267
chr2:
144381702-144381836
135
RHG15_HUMAN
335-380
46
4
A:335-380
B:335-380
C:335-380
D:335-380
46
46
46
46
1.23
ENST00000295095
23
ENSE00001070361
chr2:
144460988-144461093
106
RHG15_HUMAN
380-415
36
4
A:380-415
B:380-415
C:380-415
D:380-415
36
36
36
36
1.24
ENST00000295095
24
ENSE00001273181
chr2:
144525558-144525921
364
RHG15_HUMAN
415-475
61
4
A:415-471
B:415-471
C:415-472
D:415-471
57
57
58
57
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3byia_ (A:)
1b: SCOP_d3byib_ (B:)
1c: SCOP_d3byic_ (C:)
1d: SCOP_d3byid_ (D:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
GTPase activation domain, GAP
(18)
Superfamily
:
GTPase activation domain, GAP
(18)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3byia_
A:
1b
d3byib_
B:
1c
d3byic_
C:
1d
d3byid_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3byiD00 (D:263-471)
1b: CATH_3byiC00 (C:263-472)
1c: CATH_3byiA00 (A:261-471)
1d: CATH_3byiB00 (B:261-471)
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Organisms
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosphatidylinositol 3-kinase; Chain A
(12)
Homologous Superfamily
:
GTPase -GAP domain
(12)
Human (Homo sapiens)
(10)
1a
3byiD00
D:263-471
1b
3byiC00
C:263-472
1c
3byiA00
A:261-471
1d
3byiB00
B:261-471
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Pfam Domains
(0, 0)
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Asym.Unit (142 KB)
Header - Asym.Unit
Biol.Unit 1 (36 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
Biol.Unit 3 (36 KB)
Header - Biol.Unit 3
Biol.Unit 4 (35 KB)
Header - Biol.Unit 4
Biol.Unit 5 (136 KB)
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