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3BYA
Asym. Unit
Info
Asym.Unit (35 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
STRUCTURE OF A CALMODULIN COMPLEX
Authors
:
G. Birrane, A. Soni, J. A. A. Ladias
Date
:
15 Jan 08 (Deposition) - 20 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Calmodulin, Ef Hand Motif, Nr1, N-Methyl-D-Aspartate Receptor, Glutamate, Central Nervous System, Neuronal Channel, Calcium Channel, Methylation, Phosphoprotein, Cell Junction, Glycoprotein, Ion Transport, Ionic Channel, Magnesium, Membrane, Postsynaptic Cell Membrane, Synapse, Transmembrane, Transport, Metal Binding Protein
(Keyword Search:
[
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)
Reference
:
G. Birrane, A. Soni, J. A. A. Ladias
Structure Of A Calmodulin Complex
To Be Published
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , GLU A:140
BINDING SITE FOR RESIDUE CA A 149
2
AC2
SOFTWARE
ASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104
BINDING SITE FOR RESIDUE CA A 150
3
AC3
SOFTWARE
ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , GLU A:67
BINDING SITE FOR RESIDUE CA A 151
4
AC4
SOFTWARE
ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , GLU A:31
BINDING SITE FOR RESIDUE CA A 152
[
close Site info
]
SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_069222 (N53I, chain A, )
02: VAR_048585 (M72T, chain A, )
03: VAR_073275 (F89L, chain A, )
04: VAR_073276 (D95V, chain A, )
05: VAR_073277 (N97I, chain A, )
06: VAR_069223 (N97S, chain A, )
07: VAR_073278 (D129G, chain A, )
08: VAR_073279 (D131E, chain A, )
09: VAR_073280 (D133H, chain A, )
10: VAR_073281 (Q135P, chain A, )
11: VAR_073282 (F141L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
A
N
53
I
02
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
A
M
72
T
03
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
A
F
89
L
04
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
A
D
95
V
05
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
A
N
97
I
06
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
A
N
97
S
07
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
A
D
129
G
08
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
A
D
131
E
09
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
A
D
133
H
10
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
A
Q
135
P
11
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
A
F
141
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:7-42|A:43-73|A:81-115|A:116-146,...)
2: EF_HAND_1 (A:20-32|A:56-68|A:93-105|A:129-141...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-73
A:81-115
A:116-146
CALM2_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-73
A:81-115
A:116-146
CALM3_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-73
A:81-115
A:116-146
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
CALM2_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
CALM3_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.18e (B:875-894)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.18a/1.18e
2: Boundary 1.18e/1.19b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000371561
1a
ENSE00001273506
chr9:
140032842-140034196
1355
NMDZ1_HUMAN
1-86
86
0
-
-
1.2
ENST00000371561
2
ENSE00001273447
chr9:
140036465-140036599
135
NMDZ1_HUMAN
87-131
45
0
-
-
1.3
ENST00000371561
3
ENSE00001327436
chr9:
140040178-140040354
177
NMDZ1_HUMAN
132-190
59
0
-
-
1.5
ENST00000371561
5
ENSE00001307595
chr9:
140043461-140043561
101
NMDZ1_HUMAN
191-224
34
0
-
-
1.6
ENST00000371561
6
ENSE00001273426
chr9:
140051121-140051242
122
NMDZ1_HUMAN
224-265
42
0
-
-
1.7a
ENST00000371561
7a
ENSE00001273419
chr9:
140051315-140051489
175
NMDZ1_HUMAN
265-323
59
0
-
-
1.8a
ENST00000371561
8a
ENSE00001273411
chr9:
140052831-140052975
145
NMDZ1_HUMAN
323-371
49
0
-
-
1.8c
ENST00000371561
8c
ENSE00001273402
chr9:
140053073-140053156
84
NMDZ1_HUMAN
372-399
28
0
-
-
1.9
ENST00000371561
9
ENSE00001273395
chr9:
140055508-140055649
142
NMDZ1_HUMAN
400-447
48
0
-
-
1.10
ENST00000371561
10
ENSE00001273387
chr9:
140055741-140055868
128
NMDZ1_HUMAN
447-489
43
0
-
-
1.11
ENST00000371561
11
ENSE00001273381
chr9:
140056376-140056540
165
NMDZ1_HUMAN
490-544
55
0
-
-
1.12
ENST00000371561
12
ENSE00001273374
chr9:
140056624-140056742
119
NMDZ1_HUMAN
545-584
40
0
-
-
1.13
ENST00000371561
13
ENSE00001273363
chr9:
140056856-140056968
113
NMDZ1_HUMAN
584-622
39
0
-
-
1.14a
ENST00000371561
14a
ENSE00001273356
chr9:
140057043-140057191
149
NMDZ1_HUMAN
622-671
50
0
-
-
1.15
ENST00000371561
15
ENSE00001273349
chr9:
140057298-140057455
158
NMDZ1_HUMAN
672-724
53
0
-
-
1.16
ENST00000371561
16
ENSE00001325782
chr9:
140057621-140057782
162
NMDZ1_HUMAN
724-778
55
0
-
-
1.17
ENST00000371561
17
ENSE00001313149
chr9:
140058011-140058120
110
NMDZ1_HUMAN
778-815
38
0
-
-
1.18a
ENST00000371561
18a
ENSE00001273335
chr9:
140058211-140058356
146
NMDZ1_HUMAN
815-863
49
0
-
-
1.18e
ENST00000371561
18e
ENSE00001273328
chr9:
140059638-140059748
111
NMDZ1_HUMAN
864-900
37
1
B:875-894
20
1.19b
ENST00000371561
19b
ENSE00001361270
chr9:
140061863-140063207
1345
NMDZ1_HUMAN
901-938
38
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3byaa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
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(
)
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d3byaa_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Nucleic
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