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Getting 'Exon' information from database.
3BVO
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CO-CHAPERONE PROTEIN HSCB
Authors
:
E. Bitto, C. A. Bingman, J. G. Mccoy, G. E. Wesenberg, G. N. Phillips Jr. For Eukaryotic Structural Genomics (Cesg)
Date
:
07 Jan 08 (Deposition) - 15 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Co-Chaperone Protein Hscb, Structural Genomics Medical Relevance, Protein Structure Initiative, Psi-2, Center For Eukaryotic Structural Genomics, Cesg, Mitochondrion, Transit Peptide, Chaperone
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Bitto, C. A. Bingman, L. Bittova, D. A. Kondrashov, R. M. Bannen, B. G. Fox, J. L. Markley, G. N. Phillips
Structure Of Human J-Type Co-Chaperone Hscb Reveals A Tetracysteine Metal-Binding Domain.
J. Biol. Chem. V. 283 30184 2008
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
2a: SULFATE ION (SO4a)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
1
Ligand/Ion
SULFATE ION
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:41 , CYS A:44 , CYS A:58 , CYS A:61
BINDING SITE FOR RESIDUE ZN A 301
2
AC2
SOFTWARE
CYS B:41 , ASN B:43 , CYS B:44 , CYS B:58 , CYS B:61
BINDING SITE FOR RESIDUE ZN B 301
3
AC3
SOFTWARE
SER A:82 , PHE A:83 , ARG A:84 , PHE A:203 , GLU A:204
BINDING SITE FOR RESIDUE SO4 A 401
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048916 (Y73C, chain A/B, )
2: VAR_048917 (I163M, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048916
Y
73
C
HSC20_HUMAN
Polymorphism
17886090
A/B
Y
73
C
2
UniProt
VAR_048917
I
163
M
HSC20_HUMAN
Polymorphism
17884212
A/B
I
163
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(6, 12)
Info
All Exons
Exon 1.1a (A:39-79 | B:40-79 (gaps))
Exon 1.3b (A:79-111 | B:79-111)
Exon 1.4a (A:112-141 | B:112-141)
Exon 1.6 (A:142-190 | B:142-190 (gaps))
Exon 1.7 (A:190-206 | B:190-206)
Exon 1.8c (A:206-235 | B:206-234)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/1.4a
4: Boundary 1.4a/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8c
7: Boundary 1.8c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000216027
1a
ENSE00001048167
chr22:
29138019-29138319
301
HSC20_HUMAN
1-79
79
2
A:39-79
B:40-79 (gaps)
41
40
1.3b
ENST00000216027
3b
ENSE00000651976
chr22:
29139870-29139966
97
HSC20_HUMAN
79-111
33
2
A:79-111
B:79-111
33
33
1.4a
ENST00000216027
4a
ENSE00001773843
chr22:
29140603-29140692
90
HSC20_HUMAN
112-141
30
2
A:112-141
B:112-141
30
30
1.6
ENST00000216027
6
ENSE00001706163
chr22:
29141852-29141996
145
HSC20_HUMAN
142-190
49
2
A:142-190
B:142-190 (gaps)
49
49
1.7
ENST00000216027
7
ENSE00001636126
chr22:
29147229-29147276
48
HSC20_HUMAN
190-206
17
2
A:190-206
B:190-206
17
17
1.8c
ENST00000216027
8c
ENSE00000935935
chr22:
29153066-29153498
433
HSC20_HUMAN
206-235
30
2
A:206-235
B:206-234
30
29
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3bvoB01 (B:40-143)
1b: CATH_3bvoA01 (A:39-149)
2a: CATH_3bvoA02 (A:150-235)
2b: CATH_3bvoB02 (B:156-234)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.110, no name defined]
(21)
Human (Homo sapiens)
(3)
1a
3bvoB01
B:40-143
1b
3bvoA01
A:39-149
Architecture
:
Up-down Bundle
(3216)
Topology
:
Monooxygenase
(39)
Homologous Superfamily
:
[code=1.20.1280.20, no name defined]
(5)
Human (Homo sapiens)
(1)
2a
3bvoA02
A:150-235
2b
3bvoB02
B:156-234
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Pfam Domains
(0, 0)
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Asym.Unit (70 KB)
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