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3BUX
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (4 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (4 KB)
Biol.Unit 4 (59 KB)
Biol.Unit 5 (60 KB)
Biol.Unit 6 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C-CBL-TKB DOMAIN COMPLEXED WITH ITS BINDING MOTIF IN C-MET
Authors
:
C. Ng, R. A. Jackson, J. P. Buschdorf, Q. Sun, G. R. Guy, J. Sivaraman
Date
:
03 Jan 08 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Cbl, Tkb, Ligase, Signal Transduction, Proto-Oncogene, Complex, Atp-Binding, Glycoprotein, Kinase, Membrane, Nucleotide-Binding, Phosphoprotein, Receptor, Transferase, Transmembrane, Tyrosine-Protein Kinase, Calcium, Cytoplasm, Metal-Binding, Sh2 Domain, Ubl Conjugation Pathway, Zinc, Zinc-Finger, Ligase/Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Ng, R. A. Jackson, J. P. Buschdorf, Q. Sun, G. R. Guy, J. Sivaraman
Structural Basis For A Novel Intrapeptidyl H-Bond And Reverse Binding Of C-Cbl-Tkb Domain Substrates
Embo J. V. 27 804 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
1b: O-PHOSPHOTYROSINE (PTRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PTR
2
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071040 (K287R, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071040
K
287
R
CBL_HUMAN
Unclassified
---
B/D
K
287
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CBL_PTB (B:47-351,D:47-351)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBL_PTB
PS51506
Cbl-type phosphotyrosine-binding (Cbl-PTB) domain profile.
CBL_HUMAN
47-351
2
B:47-351
D:47-351
[
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Exons
(8, 16)
Info
All Exons
Exon 1.1 (B:47-65 | D:47-65)
Exon 1.2 (B:66-148 | D:66-148)
Exon 1.3 (B:148-197 | D:148-197)
Exon 1.4 (B:197-249 | D:197-249)
Exon 1.5 (B:250-290 | D:250-290)
Exon 1.6 (B:290-336 | D:290-336)
Exon 1.7 (B:336-351 | D:336-351)
Exon 2.17 (A:998-1005 | C:998-1005)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 2.16/2.17
10: Boundary 2.17/2.18b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264033
1
ENSE00001240819
chr11:
119076752-119077322
571
CBL_HUMAN
1-65
65
2
B:47-65
D:47-65
19
19
1.2
ENST00000264033
2
ENSE00001240799
chr11:
119103158-119103405
248
CBL_HUMAN
66-148
83
2
B:66-148
D:66-148
83
83
1.3
ENST00000264033
3
ENSE00001240795
chr11:
119142445-119142591
147
CBL_HUMAN
148-197
50
2
B:148-197
D:148-197
50
50
1.4
ENST00000264033
4
ENSE00001240790
chr11:
119144578-119144734
157
CBL_HUMAN
197-249
53
2
B:197-249
D:197-249
53
53
1.5
ENST00000264033
5
ENSE00001240782
chr11:
119145542-119145663
122
CBL_HUMAN
250-290
41
2
B:250-290
D:250-290
41
41
1.6
ENST00000264033
6
ENSE00001240776
chr11:
119146707-119146844
138
CBL_HUMAN
290-336
47
2
B:290-336
D:290-336
47
47
1.7
ENST00000264033
7
ENSE00001128289
chr11:
119148467-119148554
88
CBL_HUMAN
336-365
30
2
B:336-351
D:336-351
16
16
1.8
ENST00000264033
8
ENSE00001795866
chr11:
119148876-119149007
132
CBL_HUMAN
366-409
44
0
-
-
1.9
ENST00000264033
9
ENSE00001128273
chr11:
119149220-119149423
204
CBL_HUMAN
410-477
68
0
-
-
1.10
ENST00000264033
10
ENSE00000796209
chr11:
119155679-119155810
132
CBL_HUMAN
478-521
44
0
-
-
1.11
ENST00000264033
11
ENSE00001206751
chr11:
119155899-119156276
378
CBL_HUMAN
522-647
126
0
-
-
1.12
ENST00000264033
12
ENSE00000796211
chr11:
119158562-119158656
95
CBL_HUMAN
648-679
32
0
-
-
1.13
ENST00000264033
13
ENSE00000796212
chr11:
119167628-119167744
117
CBL_HUMAN
679-718
40
0
-
-
1.14
ENST00000264033
14
ENSE00000796213
chr11:
119168094-119168191
98
CBL_HUMAN
718-751
34
0
-
-
1.15
ENST00000264033
15
ENSE00000796214
chr11:
119169068-119169250
183
CBL_HUMAN
751-812
62
0
-
-
1.16
ENST00000264033
16
ENSE00001238481
chr11:
119170205-119177651
7447
CBL_HUMAN
812-906
95
0
-
-
2.1c
ENST00000397752
1c
ENSE00001865305
chr7:
116312446-116312631
186
MET_HUMAN
-
0
0
-
-
2.3c
ENST00000397752
3c
ENSE00001238915
chr7:
116339125-116340338
1214
MET_HUMAN
1-400
400
0
-
-
2.6
ENST00000397752
6
ENSE00000717722
chr7:
116371722-116371913
192
MET_HUMAN
401-464
64
0
-
-
2.7
ENST00000397752
7
ENSE00000717724
chr7:
116380004-116380138
135
MET_HUMAN
465-509
45
0
-
-
2.8
ENST00000397752
8
ENSE00000717726
chr7:
116380906-116381079
174
MET_HUMAN
510-567
58
0
-
-
2.9b
ENST00000397752
9b
ENSE00000717728
chr7:
116395409-116395569
161
MET_HUMAN
568-621
54
0
-
-
2.10
ENST00000397752
10
ENSE00000717730
chr7:
116397491-116397593
103
MET_HUMAN
621-655
35
0
-
-
2.11b
ENST00000397752
11b
ENSE00000717732
chr7:
116397692-116397828
137
MET_HUMAN
656-701
46
0
-
-
2.12a
ENST00000397752
12a
ENSE00000717735
chr7:
116398513-116398674
162
MET_HUMAN
701-755
55
0
-
-
2.13b
ENST00000397752
13b
ENSE00001530016
chr7:
116399445-116399544
100
MET_HUMAN
755-788
34
0
-
-
2.14
ENST00000397752
14
ENSE00000717791
chr7:
116403104-116403322
219
MET_HUMAN
789-861
73
0
-
-
2.15a
ENST00000397752
15a
ENSE00000717803
chr7:
116409699-116409845
147
MET_HUMAN
862-910
49
0
-
-
2.16
ENST00000397752
16
ENSE00000717811
chr7:
116411552-116411708
157
MET_HUMAN
911-963
53
0
-
-
2.17
ENST00000397752
17
ENSE00000717833
chr7:
116411903-116412043
141
MET_HUMAN
963-1010
48
2
A:998-1005
C:998-1005
8
8
2.18b
ENST00000397752
18b
ENSE00000717861
chr7:
116414935-116415165
231
MET_HUMAN
1010-1087
78
0
-
-
2.19
ENST00000397752
19
ENSE00000717879
chr7:
116417443-116417523
81
MET_HUMAN
1087-1114
28
0
-
-
2.20
ENST00000397752
20
ENSE00000717895
chr7:
116418830-116419011
182
MET_HUMAN
1114-1174
61
0
-
-
2.21
ENST00000397752
21
ENSE00000717902
chr7:
116422042-116422151
110
MET_HUMAN
1175-1211
37
0
-
-
2.22
ENST00000397752
22
ENSE00000717928
chr7:
116423358-116423523
166
MET_HUMAN
1211-1266
56
0
-
-
2.23
ENST00000397752
23
ENSE00000717937
chr7:
116435709-116435845
137
MET_HUMAN
1267-1312
46
0
-
-
2.24b
ENST00000397752
24b
ENSE00000881894
chr7:
116435941-116438440
2500
MET_HUMAN
1312-1390
79
0
-
-
[
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]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3buxb1 (B:178-263)
1b: SCOP_d3buxd1 (D:178-263)
2a: SCOP_d3buxb2 (B:48-177)
2b: SCOP_d3buxd2 (D:48-177)
3a: SCOP_d3buxb3 (B:264-351)
3b: SCOP_d3buxd3 (D:264-351)
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)
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)
(
)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
EF-hand modules in multidomain proteins
(29)
Protein domain
:
Cbl
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3buxb1
B:178-263
1b
d3buxd1
D:178-263
Fold
:
N-cbl like
(37)
Superfamily
:
N-terminal domain of cbl (N-cbl)
(12)
Family
:
N-terminal domain of cbl (N-cbl)
(10)
Protein domain
:
N-terminal domain of cbl (N-cbl)
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d3buxb2
B:48-177
2b
d3buxd2
D:48-177
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Cbl
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
3a
d3buxb3
B:264-351
3b
d3buxd3
D:264-351
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_3buxB03 (B:265-350)
1b: CATH_3buxD03 (D:265-350)
2a: CATH_3buxB02 (B:176-264)
2b: CATH_3buxD02 (D:176-264)
3a: CATH_3buxB01 (B:47-175)
3b: CATH_3buxD01 (D:47-175)
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)
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)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
[unclassified]
(7)
1a
3buxB03
B:265-350
1b
3buxD03
D:265-350
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
[unclassified]
(6)
2a
3buxB02
B:176-264
2b
3buxD02
D:176-264
Architecture
:
Up-down Bundle
(3216)
Topology
:
Transcription Elongation Factor S-II; Chain A
(14)
Homologous Superfamily
:
[code=1.20.930.20, no name defined]
(9)
[unclassified]
(4)
3a
3buxB01
B:47-175
3b
3buxD01
D:47-175
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (121 KB)
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