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3BUM
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (4 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C-CBL-TKB DOMAIN COMPLEXED WITH ITS BINDING MOTIF IN SPROUTY2
Authors
:
C. Ng, A. R. Jackson, P. J. Buschdorf, Q. Sun, R. G. Guy, J. Sivaraman
Date
:
03 Jan 08 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Ligase, Signal Transduction, Proto-Oncogene, Complex, Cytoplasm, Developmental Protein, Membrane, Microtubule, Polymorphism, Calcium, Metal-Binding, Phosphoprotein, Sh2 Domain, Ubl Conjugation Pathway, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Ng, R. A. Jackson, J. P. Buschdorf, Q. Sun, G. R. Guy, J. Sivaraman
Structural Basis For A Novel Intrapeptidyl H-Bond And Reverse Binding Of C-Cbl-Tkb Domain Substrates
Embo J. V. 27 804 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071040 (K287R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071040
K
287
R
CBL_HUMAN
Unclassified
---
B
K
287
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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Exons
(8, 8)
Info
All Exons
Exon 1.1 (B:48-65)
Exon 1.2 (B:66-148)
Exon 1.3 (B:148-197)
Exon 1.4 (B:197-249)
Exon 1.5 (B:250-290)
Exon 1.6 (B:290-336)
Exon 1.7 (B:336-351)
Exon 2.3 (A:52-60)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 2.1/2.3
10: Boundary 2.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264033
1
ENSE00001240819
chr11:
119076752-119077322
571
CBL_HUMAN
1-65
65
1
B:48-65
18
1.2
ENST00000264033
2
ENSE00001240799
chr11:
119103158-119103405
248
CBL_HUMAN
66-148
83
1
B:66-148
83
1.3
ENST00000264033
3
ENSE00001240795
chr11:
119142445-119142591
147
CBL_HUMAN
148-197
50
1
B:148-197
50
1.4
ENST00000264033
4
ENSE00001240790
chr11:
119144578-119144734
157
CBL_HUMAN
197-249
53
1
B:197-249
53
1.5
ENST00000264033
5
ENSE00001240782
chr11:
119145542-119145663
122
CBL_HUMAN
250-290
41
1
B:250-290
41
1.6
ENST00000264033
6
ENSE00001240776
chr11:
119146707-119146844
138
CBL_HUMAN
290-336
47
1
B:290-336
47
1.7
ENST00000264033
7
ENSE00001128289
chr11:
119148467-119148554
88
CBL_HUMAN
336-365
30
1
B:336-351
16
1.8
ENST00000264033
8
ENSE00001795866
chr11:
119148876-119149007
132
CBL_HUMAN
366-409
44
0
-
-
1.9
ENST00000264033
9
ENSE00001128273
chr11:
119149220-119149423
204
CBL_HUMAN
410-477
68
0
-
-
1.10
ENST00000264033
10
ENSE00000796209
chr11:
119155679-119155810
132
CBL_HUMAN
478-521
44
0
-
-
1.11
ENST00000264033
11
ENSE00001206751
chr11:
119155899-119156276
378
CBL_HUMAN
522-647
126
0
-
-
1.12
ENST00000264033
12
ENSE00000796211
chr11:
119158562-119158656
95
CBL_HUMAN
648-679
32
0
-
-
1.13
ENST00000264033
13
ENSE00000796212
chr11:
119167628-119167744
117
CBL_HUMAN
679-718
40
0
-
-
1.14
ENST00000264033
14
ENSE00000796213
chr11:
119168094-119168191
98
CBL_HUMAN
718-751
34
0
-
-
1.15
ENST00000264033
15
ENSE00000796214
chr11:
119169068-119169250
183
CBL_HUMAN
751-812
62
0
-
-
1.16
ENST00000264033
16
ENSE00001238481
chr11:
119170205-119177651
7447
CBL_HUMAN
812-906
95
0
-
-
2.1
ENST00000377104
1
ENSE00001472796
chr13:
80915086-80914757
330
SPY2_HUMAN
-
0
0
-
-
2.3
ENST00000377104
3
ENSE00001472795
chr13:
80911891-80910111
1781
SPY2_HUMAN
1-332
332
1
A:52-60
9
[
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3bumb1 (B:178-263)
2a: SCOP_d3bumb2 (B:48-177)
3a: SCOP_d3bumb3 (B:264-351)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
EF-hand modules in multidomain proteins
(29)
Protein domain
:
Cbl
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3bumb1
B:178-263
Fold
:
N-cbl like
(37)
Superfamily
:
N-terminal domain of cbl (N-cbl)
(12)
Family
:
N-terminal domain of cbl (N-cbl)
(10)
Protein domain
:
N-terminal domain of cbl (N-cbl)
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d3bumb2
B:48-177
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Cbl
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
3a
d3bumb3
B:264-351
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_3bumB03 (B:265-350)
2a: CATH_3bumB02 (B:176-264)
3a: CATH_3bumB01 (B:48-175)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
3bumB03
B:265-350
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
2a
3bumB02
B:176-264
Architecture
:
Up-down Bundle
(3216)
Topology
:
Transcription Elongation Factor S-II; Chain A
(14)
Homologous Superfamily
:
[code=1.20.930.20, no name defined]
(9)
Human (Homo sapiens)
(5)
3a
3bumB01
B:48-175
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (63 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
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